Name: Marivita byunsanensis SMK-114
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24518

Type strain:

Species: Marivita byunsanensis

Strain Designation: SMK-114

Culture col. no.: DSM 28225, CCUG 57612, KCTC 22632

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 580872 (species)

SI-ID 398978

DSM 28225, CCUG 57612

Special Collections

Section

Marivita byunsanensis SMK-114 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Marivita*
	Species	**Marivita byunsanensis**
	Full Scientific Name (LPSN)	Marivita byunsanensis (Yoon et al. 2010) Yoon et al. 2012

Synonym

Gaetbulicola byunsanensis

Information on morphological and physiological properties Morphology

[Ref.: #29330]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29330]	Cell length	8.25 µm

[Ref.: #29330]	Cell width	2 µm

[Ref.: #29330]	Cell shape	rod-shaped

[Ref.: #21198]

Incubation period

3-7 days

[Ref.: #29330]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21198]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21198]

Culture medium growth

[Ref.: #21198]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21198]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21198]	growth	25 °C
[Ref.: #29330]	growth	10-40 °C
[Ref.: #29330]	optimum	27.5 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29330]			optimum	7.5
[Ref.: #29330]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29330]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29330]		NaCl		growth	0-6	%
[Ref.: #29330]		NaCl		optimum	2	%

[Ref.: #67771]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29330]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #29330]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #29330]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #29330]	fructose ChEBI	+	carbon source
[Ref.: #29330]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #29330]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #29330]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #29330]	mannose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #29330]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #29330]	pyruvate ChEBI	+	carbon source
[Ref.: #29330]	succinate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #29330]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #21198]	catalase	+	1.11.1.6
[Ref.: #29330]	catalase	+	1.11.1.6
[Ref.: #29330]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #21198]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21198]	23988	+	-	-	-	-	-	-	+	-	-	-	+	-	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29330]	Sample type/isolated from	marine sediment

[Ref.: #61390]	Sample type/isolated from	Tidal flat sediment
[Ref.: #61390]	Sampling date	2006-01-01
[Ref.: #61390]	Geographic location (country and/or sea, region)	Byunsan,Yellow Sea
[Ref.: #61390]	Country	Republic of Korea
[Ref.: #61390]	Country ISO 3 Code	KOR
[Ref.: #61390]	Continent	Asia

[Ref.: #21198]	Sample type/isolated from	tideland
[Ref.: #21198]	Geographic location (country and/or sea, region)	Byunsan
[Ref.: #21198]	Country	Republic of Korea
[Ref.: #21198]	Country ISO 3 Code	KOR
[Ref.: #21198]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tideland
[Ref.: #67771]	Geographic location (country and/or sea, region)	Byunsan
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21198]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21198]	Gaetbulicola byunsanensis strain SMK-114 16S ribosomal RNA gene, partial sequence	FJ467624	1422	GenBank ENA	580872 tax ID

[Ref.: #29330]	GC-content	60 mol%
[Ref.: #67771]	GC-content	60.0 mol%

Availability in culture collections External links

[Ref.: #21198]

Culture collection no.

DSM 28225, CCUG 57612, KCTC 22632

[Ref.: #88373]

SI-ID 398978

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marivita hallyeonensis sp. nov., isolated from seawater, reclassification of Gaetbulicola byunsanensis as Marivita byunsanensis comb. nov. and emended description of the genus Marivita Hwang et al. 2009.	Yoon JH, Kang SJ, Lee SY, Jung YT, Lee JS, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.032086-0	2011	*
Phylogeny	Gaetbulicola byunsanensis gen. nov., sp. nov., isolated from tidal flat sediment.	Yoon JH, Kang SJ, Jung YT, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.011015-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21198

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28225

#29330

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25742 (see below)

#61390 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57612
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68369

Automatically annotated from API 20NE .

#88373

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398978.1 )

#25742

IJSEM 196 2010 ( DOI 10.1099/ijs.0.011015-0 , PubMed 19648332 )

* These data were automatically processed and therefore are not curated

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