Name: Seohaeicola saemankumensis SD-15
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24517

Type strain:

Species: Seohaeicola saemankumensis

Strain Designation: SD-15

Culture col. no.: DSM 28224, CCUG 55328, KCTC 22175

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 481181 (species)

SI-ID 398381

DSM 28224, CCUG 55328

Special Collections

Section

Seohaeicola saemankumensis SD-15 is an anaerobe, Gram-negative bacterium that was isolated from tidal flat.

Gram-negative
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Seohaeicola*
	Species	**Seohaeicola saemankumensis**
	Full Scientific Name (LPSN)	Seohaeicola saemankumensis Yoon et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29347]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29347]	Cell length	5.5 µm

[Ref.: #29347]	Cell width	1.25 µm

[Ref.: #29347]	Motility	no

[Ref.: #21202]

Incubation period

3-7 days

[Ref.: #29347]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21202]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21202]

Culture medium growth

[Ref.: #21202]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21202]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21202]	growth	25 °C
[Ref.: #29347]	growth	04-40 °C
[Ref.: #29347]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29347]			optimum	7.5
[Ref.: #29347]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29347]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29347]		NaCl		growth	01-07	%
[Ref.: #29347]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29347]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #29347]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #29347]	mannose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #29347]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #29347]	succinate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #21202]	catalase	+	1.11.1.6
[Ref.: #21202]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21202]	23987	+	-	-	-	+	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21202]	Sample type/isolated from	tidal flat
[Ref.: #21202]	Geographic location (country and/or sea, region)	Saemankum, Yellow Sea
[Ref.: #21202]	Country	Republic of Korea
[Ref.: #21202]	Country ISO 3 Code	KOR
[Ref.: #21202]	Continent	Asia

[Ref.: #60530]	Sample type/isolated from	Tidal flat sediment
[Ref.: #60530]	Sampling date	2005
[Ref.: #60530]	Geographic location (country and/or sea, region)	Saemankum,Yellow Sea
[Ref.: #60530]	Country	Republic of Korea
[Ref.: #60530]	Country ISO 3 Code	KOR
[Ref.: #60530]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat
[Ref.: #67771]	Geographic location (country and/or sea, region)	Saemankum, the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU221274 (>99% sequence identity) for Seohaeicola saemankumensis subclade from Microbeatlas

Aquatic Samples	3567
Soil Samples	298
Animal Samples	486
Plant Samples	60
Total Samples	4411

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21202]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21202]	Seohaeicola saemankumensis strain SD-15 16S ribosomal RNA gene, partial sequence	EU221274	1422	GenBank ENA	481181 tax ID

[Ref.: #29347]

GC-content

63.4 mol%

Availability in culture collections External links

[Ref.: #21202]

Culture collection no.

DSM 28224, CCUG 55328, KCTC 22175

[Ref.: #88372]

SI-ID 398381

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Seohaeicola saemankumensis gen. nov., sp. nov., isolated from a tidal flat.	Yoon JH, Kang SJ, Lee SY, Oh KH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.011312-0	2009	*
Phylogeny	Seohaeicola nanhaiensis sp. nov., a moderately halophilic bacterium isolated from the benthic sediment of South China Sea.	Xie BS, Lv XL, Cai M, Tang YQ, Wang YN, Cui HL, Liu XY, Tan Y, Wu XL	Curr Microbiol	10.1007/s00284-014-0658-9	2014	*
Phylogeny	Seohaeicola westpacificensis sp. nov., a novel member of genera Seohaeicola isolated from deep West Pacific Sea water.	Xian S, Zhang R, Sun J, Chen Y, Deng W, Li S, Jiao N	Curr Microbiol	10.1007/s00284-014-0548-1	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21202

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28224

#29347

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25759 (see below)

#60530 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55328
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88372

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398381.1 )

#25759

IJSEM 2675 2009 ( DOI 10.1099/ijs.0.011312-0 , PubMed 19625441 )

* These data were automatically processed and therefore are not curated

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