Actinokineospora bangkokensis (DSM 46700, BCC 53155, NBRC 108932)

Cell morphology

Pigmentation

Multimedia

• @ref:	20243
  multimedia content:	DSM_46700.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46700.jpg
  caption:	Medium 65 28°C
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
20243	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20243	BENNETT'S AGAR (DSMZ Medium 548)		Medium recipe at MediaDive	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water

Culture temp

Culture pH

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30936	28757 ChEBI	fructose	+	carbon source
30936	17234 ChEBI	glucose	+	carbon source
30936	29864 ChEBI	mannitol	+	carbon source
30936	17992 ChEBI	sucrose	+	carbon source
30936	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30936	acid phosphatase	+	3.1.3.2
30936	alkaline phosphatase	+	3.1.3.1
30936	alpha-galactosidase	+	3.2.1.22
30936	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	starch degradation	100	10 of 10
66794	dTDPLrhamnose biosynthesis	100	8 of 8
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	aclacinomycin biosynthesis	100	7 of 7
66794	glycogen metabolism	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	adipate degradation	100	2 of 2
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	cellulose degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	glycine betaine biosynthesis	100	5 of 5
66794	NAD metabolism	94.44	17 of 18
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	purine metabolism	86.17	81 of 94
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	methionine metabolism	84.62	22 of 26
66794	urea cycle	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	glycolysis	82.35	14 of 17
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	factor 420 biosynthesis	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	flavin biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	histidine metabolism	79.31	23 of 29
66794	photosynthesis	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	cysteine metabolism	77.78	14 of 18
66794	allantoin degradation	77.78	7 of 9
66794	tryptophan metabolism	76.32	29 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	carotenoid biosynthesis	72.73	16 of 22
66794	metabolism of disaccharids	72.73	8 of 11
66794	lysine metabolism	71.43	30 of 42
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	tyrosine metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	oxidative phosphorylation	70.33	64 of 91
66794	polyamine pathway	69.57	16 of 23
66794	vitamin B1 metabolism	69.23	9 of 13
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	degradation of sugar alcohols	68.75	11 of 16
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	phenol degradation	65	13 of 20
66794	d-xylose degradation	63.64	7 of 11
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	lipoate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	propanol degradation	57.14	4 of 7
66794	lipid A biosynthesis	55.56	5 of 9
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	degradation of pentoses	53.57	15 of 28
66794	selenocysteine biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	chlorophyll metabolism	50	9 of 18
66794	cyclohexanol degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	arachidonate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	3-phenylpropionate degradation	40	6 of 15
66794	3-chlorocatechol degradation	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	vitamin B6 metabolism	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	mevalonate metabolism	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence JQ922512 (>99% sequence identity) for Actinokineospora bangkokensis subclade from Microbeatlas

Aquatic Samples	6
Soil Samples	25
Animal Samples	12
Plant Samples	5
Total Samples	48

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM194045v1 assembly for Actinokineospora bangkokensis 44EHW	scaffold	GCA_001940455	2865852738	1193682	62.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20243	Actinokineospora bangkokensis strain 44EHW 16S ribosomal RNA gene, partial sequence	JQ922512	1398		1193682

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	The Draft Genome Sequence of Actinokineospora bangkokensis 44EHW(T) Reveals the Biosynthetic Pathway of the Antifungal Thailandin Compounds with Unusual Butylmalonyl-CoA Extender Units.	Greule A, Intra B, Flemming S, Rommel MG, Panbangred W, Bechthold A	Molecules	10.3390/molecules21111607	2016
Metabolism	Thailandins A and B, New Polyene Macrolactone Compounds Isolated from Actinokineospora bangkokensis Strain 44EHW(T), Possessing Antifungal Activity against Anthracnose Fungi and Pathogenic Yeasts.	Intra B, Greule A, Bechthold A, Euanorasetr J, Paululat T, Panbangred W	J Agric Food Chem	10.1021/acs.jafc.6b01119	2016
Phylogeny	Actinokineospora pegani sp. nov., an endophytic actinomycete isolated from the surface-sterilized root of Peganum harmala L.	Lei YJ, Xia ZF, Luo XX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.004299	2020
Phylogeny	Actinokineospora bangkokensis sp. nov., isolated from rhizospheric soil.	Intra B, Matsumoto A, Inahashi Y, Omura S, Takahashi Y, Panbangred W	Int J Syst Evol Microbiol	10.1099/ijs.0.047928-0	2013