Strain identifier
BacDive ID: 24443
Type strain:
Species: Actinokineospora bangkokensis
Strain Designation: 44EHW
Strain history: <- C Suriyachadkun, BCC; BCC 53155
NCBI tax ID(s): 1193682 (species)
General
@ref: 20243
BacDive-ID: 24443
DSM-Number: 46700
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped
description: Actinokineospora bangkokensis 44EHW is an aerobe, spore-forming, mesophilic bacterium that was isolated from rhizospheric soil under an Elephant ear plant Colocasia esculenta.
NCBI tax id
- NCBI tax id: 1193682
- Matching level: species
strain history
- @ref: 20243
- history: <- C Suriyachadkun, BCC; BCC 53155
doi: 10.13145/bacdive24443.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinokineospora
- species: Actinokineospora bangkokensis
- full scientific name: Actinokineospora bangkokensis Intra et al. 2013
@ref: 20243
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinokineospora
species: Actinokineospora bangkokensis
full scientific name: Actinokineospora bangkokensis Intra et al. 2013
strain designation: 44EHW
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
30936 | positive | rod-shaped | no | |
69480 | no | 90.601 | ||
69480 | positive | 99.719 |
pigmentation
- @ref: 30936
- production: yes
multimedia
- @ref: 20243
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46700.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
20243 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
20243 | BENNETT'S AGAR (DSMZ Medium 548) | yes | https://mediadive.dsmz.de/medium/548 | Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20243 | positive | growth | 28 | mesophilic |
30936 | positive | growth | 12-39 |
culture pH
- @ref: 30936
- ability: positive
- type: growth
- pH: 04-11
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 30936
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
30936 | yes | |
69481 | yes | 100 |
69480 | yes | 100 |
halophily
- @ref: 30936
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 01-03 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30936 | 28757 | fructose | + | carbon source |
30936 | 17234 | glucose | + | carbon source |
30936 | 29864 | mannitol | + | carbon source |
30936 | 17992 | sucrose | + | carbon source |
30936 | 18222 | xylose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30936 | acid phosphatase | + | 3.1.3.2 |
30936 | alkaline phosphatase | + | 3.1.3.1 |
30936 | alpha-galactosidase | + | 3.2.1.22 |
30936 | gelatinase | + |
Isolation, sampling and environmental information
isolation
- @ref: 20243
- sample type: rhizospheric soil under an Elephant ear plant Colocasia esculenta
- geographic location: Bangkok
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_50124.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_394;97_444;98_36038;99_50124&stattab=map
- Last taxonomy: Actinokineospora bangkokensis subclade
- 16S sequence: JQ922512
- Sequence Identity:
- Total samples: 48
- soil counts: 25
- aquatic counts: 6
- animal counts: 12
- plant counts: 5
Safety information
risk assessment
- @ref: 20243
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20243
- description: Actinokineospora bangkokensis strain 44EHW 16S ribosomal RNA gene, partial sequence
- accession: JQ922512
- length: 1398
- database: ena
- NCBI tax ID: 1193682
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Actinokineospora bangkokensis 44EHW | GCA_001940455 | scaffold | ncbi | 1193682 |
66792 | Actinokineospora bangkokensis 44EHW | 2865852738 | draft | img | 1193682 |
GC content
- @ref: 20243
- GC-content: 74
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
flagellated | no | 97.173 | yes |
gram-positive | yes | 90.033 | yes |
anaerobic | no | 99.049 | no |
halophile | no | 90.783 | no |
spore-forming | yes | 95.437 | yes |
glucose-util | yes | 88.503 | yes |
aerobic | yes | 93.385 | yes |
thermophile | no | 99.093 | yes |
motile | no | 93.717 | no |
glucose-ferment | no | 93.64 | no |
External links
@ref: 20243
culture collection no.: DSM 46700, BCC 53155, NBRC 108932
straininfo link
- @ref: 88320
- straininfo: 406402
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23291892 | Actinokineospora bangkokensis sp. nov., isolated from rhizospheric soil. | Intra B, Matsumoto A, Inahashi Y, Omura S, Takahashi Y, Panbangred W | Int J Syst Evol Microbiol | 10.1099/ijs.0.047928-0 | 2013 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Metabolism | 27267862 | Thailandins A and B, New Polyene Macrolactone Compounds Isolated from Actinokineospora bangkokensis Strain 44EHW(T), Possessing Antifungal Activity against Anthracnose Fungi and Pathogenic Yeasts. | Intra B, Greule A, Bechthold A, Euanorasetr J, Paululat T, Panbangred W | J Agric Food Chem | 10.1021/acs.jafc.6b01119 | 2016 | Actinobacteria/*chemistry/isolation & purification/metabolism, Antifungal Agents/chemistry/metabolism/*pharmacology, Candida albicans/drug effects, Colletotrichum/drug effects, Cryptococcus neoformans/drug effects, Fermentation, Microbial Sensitivity Tests, Molecular Structure, Plant Diseases/*microbiology, Polyenes/chemistry/metabolism/pharmacology, Thailand | Pathogenicity |
Genetics | 27886115 | The Draft Genome Sequence of Actinokineospora bangkokensis 44EHW(T) Reveals the Biosynthetic Pathway of the Antifungal Thailandin Compounds with Unusual Butylmalonyl-CoA Extender Units. | Greule A, Intra B, Flemming S, Rommel MG, Panbangred W, Bechthold A | Molecules | 10.3390/molecules21111607 | 2016 | Actinobacteria/*genetics/metabolism, Antifungal Agents/metabolism, Base Composition, *Base Sequence, Biosynthetic Pathways, Chromosome Mapping, Genome Size, *Genome, Bacterial, Multigene Family | Metabolism |
Phylogeny | 32618556 | Actinokineospora pegani sp. nov., an endophytic actinomycete isolated from the surface-sterilized root of Peganum harmala L. | Lei YJ, Xia ZF, Luo XX, Zhang LL | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004299 | 2020 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peganum/*microbiology, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
20243 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46700 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46700) | ||||
30936 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27266 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||||
88320 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406402.1 |