Name: Aporhodopirellula sallentina SM41
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24326

Type strain:

Species: Aporhodopirellula sallentina

Strain Designation: SM41

Culture col. no.: DSM 24067, JCM 17618

Strain history: J. Harder SM41.

NCBI tax ID(s): 2024855 (species)

SI-ID 399787

DSM 24067

Section

Aporhodopirellula sallentina SM41 is a mesophilic bacterium that was isolated from surface sediment.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	Aporhodopirellula
	Species	"Aporhodopirellula sallentina"
	Full Scientific Name (LPSN)	Aporhodopirellula sallentina Sreya et al. 2023

Synonym

"Rhodopirellula sallentina"

Information on morphological and physiological properties Morphology

[Ref.: #20777]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20777]

Culture medium

M13a (PIRELLULA) MEDIUM (DSMZ Medium 600a)

[Ref.: #20777]

Culture medium growth

[Ref.: #20777]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20777]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20777]			growth	28 °C
[Ref.: #67770]			growth	26 °C

[Ref.: #20777]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20777]	Sample type/isolated from	surface sediment
[Ref.: #20777]	Geographic location (country and/or sea, region)	San Cataldo
[Ref.: #20777]	Country	Italy
[Ref.: #20777]	Country ISO 3 Code	ITA
[Ref.: #20777]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Mixture of sediment and water in San Cataldo
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20777]	Rhodopirellula sp. SM41 16S ribosomal RNA gene, complete sequence; and 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ624360	1580	ENA	595448 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodopirellula sallentina SM41	GCA_000346505	contig	GenBank	1263870 tax ID	*
[Ref.: #66792]	Rhodopirellula sallentina SM41	1263870.3	wgs	PATRIC	1263870 tax ID	*
[Ref.: #66792]	Rhodopirellula sallentina SM41	2540341033	draft	JGI IMG/M	1263870 tax ID	*

[Ref.: #67770]

GC-content

54.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodopirellula sallentina SM41 PATRIC: 1263870.3
[Ref.: #69480]	motile	yes	87.037	no
[Ref.: #69480]	gram-positive	no	97.092	no
[Ref.: #69480]	anaerobic	no	96.689	no
[Ref.: #69480]	aerobic	yes	85.631	no
[Ref.: #69480]	halophile	no	57.123	no
[Ref.: #69480]	spore-forming	no	88.215	no
[Ref.: #69480]	glucose-util	yes	86.981	no
[Ref.: #69480]	glucose-ferment	no	83.753	no
[Ref.: #69480]	flagellated	no	78.692	no
[Ref.: #69480]	thermophile	no	98.646	yes

Availability in culture collections External links

[Ref.: #20777]

Culture collection no.

DSM 24067, JCM 17618

[Ref.: #88259]

SI-ID 399787

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20777

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24067

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88259

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399787.1 )

* These data were automatically processed and therefore are not curated

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Rhodopirellula sallentina SM41

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