Name: Metaplanococcus flavidus ISL-41
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24327

Type strain:

Species: Metaplanococcus flavidus

Strain Designation: ISL-41

Culture col. no.: DSM 27642, CCUG 56756, KCTC 13261, ISL -41

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 569883 (species)

SI-ID 408039

DSM 27642, CCUG 56756

Special Collections

Section

Metaplanococcus flavidus ISL-41 is an aerobe, Gram-variable, motile bacterium that was isolated from marine solar saltern.

coccus-shaped
Gram-variable
motile
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Metaplanococcus*
	Species	**Metaplanococcus flavidus**
	Full Scientific Name (LPSN)	Metaplanococcus flavidus (Jung et al. 2009) Gupta and Patel 2020

Synonym

Planomicrobium flavidum

Information on morphological and physiological properties Morphology

[Ref.: #29236]	Gram stain	variable
[Ref.: #67771]	Gram stain	variable

[Ref.: #29236]	Cell length	1 µm

[Ref.: #29236]	Cell width	0.6 µm

[Ref.: #29236]	Cell shape	coccus-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #29236]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #67771]	Flagellum arrangement	monotrichous, polar

[Ref.: #61078]

Incubation period

1 day

[Ref.: #29236]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20736]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20736]

Culture medium growth

[Ref.: #20736]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20736]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20736]	growth	28 °C
[Ref.: #29236]	growth	04-37 °C
[Ref.: #29236]	optimum	30 °C
[Ref.: #61078]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29236]			optimum	7.5
[Ref.: #29236]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61078]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29236]		NaCl		growth	0-14	%

[Ref.: #29236]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-8, MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29236]	fructose ChEBI	+	carbon source
[Ref.: #29236]	tween 20 ChEBI	+	carbon source
[Ref.: #29236]	tween 40 ChEBI	+	carbon source
[Ref.: #29236]	tween 60 ChEBI	+	carbon source
[Ref.: #29236]	tween 80 ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29236]		catalase	+	1.11.1.6
[Ref.: #29236]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20736]	Sample type/isolated from	marine solar saltern
[Ref.: #20736]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #20736]	Country	Republic of Korea
[Ref.: #20736]	Country ISO 3 Code	KOR
[Ref.: #20736]	Continent	Asia

[Ref.: #61078]	Sample type/isolated from	Marine solar saltern sediment
[Ref.: #61078]	Sampling date	2006
[Ref.: #61078]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #61078]	Country	Republic of Korea
[Ref.: #61078]	Country ISO 3 Code	KOR
[Ref.: #61078]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From marine solar saltern of the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20736]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20736]	Planomicrobium flavidum strain ISL-41 16S ribosomal RNA gene, partial sequence	FJ265708	1506	GenBank ENA	569883 tax ID

[Ref.: #20736]	GC-content	45.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29236]	GC-content	45.9 mol%

Availability in culture collections External links

[Ref.: #20736]

Culture collection no.

DSM 27642, CCUG 56756, KCTC 13261, ISL -41

[Ref.: #88260]

SI-ID 408039

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site.	Pal Y, Mayilraj S, Paul M, Schumann P, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003541	2019	*
Phylogeny	Planomicrobium iranicum sp. nov., a novel slightly halophilic bacterium isolated from a hypersaline wetland.	Ramezani M, Nikou MM, Pourmohyadini M, Sproer C, Schumann P, Harirchi S, Aryaefar M, Fazeli SAS, Amoozegar MA, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003332	2019	*
Phylogeny	Pradoshia eiseniae gen. nov., sp. nov., a spore-forming member of the family Bacillaceae capable of assimilating 3-nitropropionic acid, isolated from the anterior gut of the earthworm Eisenia fetida.	Saha T, Ranjan VK, Ganguli S, Thakur S, Chakraborty B, Barman P, Ghosh W, Chakraborty R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003304	2019	*
Phylogeny	Planomicrobium soli sp. nov., isolated from soil.	Luo X, Zhang J, Li D, Xin Y, Xin D, Fan L	Int J Syst Evol Microbiol	10.1099/ijs.0.055426-0	2014	*
Phylogeny	Planomicrobium flavidum sp. nov., isolated from a marine solar saltern, and transfer of Planococcus stackebrandtii Mayilraj et al. 2005 to the genus Planomicrobium as Planomicrobium stackebrandtii comb. nov.	Jung YT, Kang SJ, Oh TK, Yoon JH, Kim BH	Int J Syst Evol Microbiol	10.1099/ijs.0.009191-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20736

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27642

#29236

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25657 (see below)

#61078 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56756
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#88260

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408039.1 )

#25657

IJSEM 2929 2009 ( DOI 10.1099/ijs.0.009191-0 , PubMed 19628589 )

* These data were automatically processed and therefore are not curated

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