Name: Herbaspirillum sp. SC-N056
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24267

Type strain:

Species: Herbaspirillum sp.

Strain Designation: SC-N056

Culture col. no.: DSM 21938

Strain history: <- M. Madhaiyan, Tamil Nadu Agric. Univ., Coimbatore, India; SC-N056

NCBI tax ID(s): 1890675 (species)

SI-ID 399973

DSM 21938

Other strains from Herbaspirillum sp.

H. sp. G8A1, DSM 12579
H. sp. PIV-34-1, DSM 14683
H. sp. DSM 1109
H. sp. DSM 11580, CCUG 189, CIP 105020, ...
H. sp. B477, DSM 11581, LMG 2285, NCPPB ...
H. sp. DSM 11582, CCUG 11060, LMG 5321
H. sp. SC-N042, DSM 21937
H. sp. CCUG 46344
H. sp. CCUG 47308 B
H. sp. CCUG 47983
H. sp. GTL-15, DSM 23459

Section

Herbaspirillum sp. SC-N056 is a mesophilic bacterium that was isolated from rhizosphere soil of sugar cane Saccharum officinarum L..

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Full Scientific Name (LPSN)	Herbaspirillum Baldani et al. 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20981]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20981]

Culture medium growth

[Ref.: #20981]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20981]

Culture medium composition

expand / minimize

[Ref.: #20981]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #20981]

Culture medium growth

[Ref.: #20981]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20981]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20981]			growth	28-30 °C

[Ref.: #20981]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20981]	Sample type/isolated from	rhizosphere soil of sugar cane Saccharum officinarum L.
[Ref.: #20981]	Host species	Saccharum officinarum
[Ref.: #20981]	Geographic location (country and/or sea, region)	Coimbatore
[Ref.: #20981]	Country	India
[Ref.: #20981]	Country ISO 3 Code	IND
[Ref.: #20981]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ233846 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	342
Soil Samples	197
Animal Samples	743
Plant Samples	411
Total Samples	1693

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20981]	Herbaspirillum sp. SC-N056 16S ribosomal RNA gene, partial sequence	FJ233846	1418	ENA	633469 tax ID

Availability in culture collections External links

[Ref.: #20981]

Culture collection no.

DSM 21938

[Ref.: #88209]

SI-ID 399973

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20981

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21938

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88209

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399973.1 )

* These data were automatically processed and therefore are not curated

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