Name: Herbaspirillum sp. SC-N042
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24266

Type strain:

Species: Herbaspirillum sp.

Strain Designation: SC-N042

Culture col. no.: DSM 21937

Strain history: <- M. Madhaiyan, Tamil Nadu Agric. Univ., Coimbatore, India; SC-N042

NCBI tax ID(s): 1890675 (species)

SI-ID 398643

DSM 21937

Special Collections

DSMZ

Other strains from Herbaspirillum sp.

Section

When using BacDive for research please cite our paper

Herbaspirillum sp. SC-N042 is a mesophilic bacterium that was isolated from root tissue of sugar cane Saccharum officinarum L..

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Full Scientific Name (LPSN)	Herbaspirillum Baldani et al. 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20980]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20980]

Culture medium growth

[Ref.: #20980]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20980]

Culture medium composition

expand / minimize

[Ref.: #20980]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #20980]

Culture medium growth

[Ref.: #20980]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20980]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20980]			growth	28-30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20980]	Sample type/isolated from	root tissue of sugar cane Saccharum officinarum L.
[Ref.: #20980]	Host species	Saccharum officinarum
[Ref.: #20980]	Geographic location (country and/or sea, region)	Coimbatore
[Ref.: #20980]	Country	India
[Ref.: #20980]	Country ISO 3 Code	IND
[Ref.: #20980]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ233844 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	1120
Soil Samples	646
Animal Samples	1886
Plant Samples	1556
Total Samples	5208

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20980]	Herbaspirillum sp. SC-N042 16S ribosomal RNA gene, partial sequence	FJ233844	1399	GenBank ENA	633468 tax ID

Availability in culture collections External links

[Ref.: #20980]

Culture collection no.

DSM 21937

[Ref.: #88208]

SI-ID 398643

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20980

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21937

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88208

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398643.1 )

* These data were automatically processed and therefore are not curated

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