Name: Mycobacterium arabiense DSM 45768
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24237

Type strain:

Species: Mycobacterium arabiense

Culture col. no.: DSM 45768, JCM 18538, YIM 121001

Strain history: S.-K. Tang YIM 121001.

NCBI tax ID(s): 1286181 (species)

SI-ID 406386

DSM 45768

Section

Mycobacterium arabiense DSM 45768 is a mesophilic, Gram-positive, ovoid-shaped bacterium that was isolated from coastal sand.

Gram-positive
ovoid-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium arabiense**
	Full Scientific Name (LPSN)	Mycobacterium arabiense Zhang et al. 2013

Synonym

Mycolicibacterium arabiense

Information on morphological and physiological properties Morphology

[Ref.: #31044]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31044]	Cell shape	ovoid-shaped

[Ref.: #31044]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.588

[Ref.: #31044]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20672]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #20672]

Culture medium growth

[Ref.: #20672]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20672]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20672]	growth	28 °C
[Ref.: #31044]	growth	05-37 °C
[Ref.: #31044]	optimum	31 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #20672]	Temperature range	mesophilic
[Ref.: #31044]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31044]			optimum	7
[Ref.: #31044]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31044]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.582

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31044]		NaCl		growth	0-5	%
[Ref.: #31044]		NaCl		optimum	1.5	%

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31044]		catalase	+	1.11.1.6
[Ref.: #31044]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20672]	Sample type/isolated from	coastal sand
[Ref.: #20672]	Geographic location (country and/or sea, region)	Dubai shore
[Ref.: #20672]	Country	United Arab Emirates
[Ref.: #20672]	Country ISO 3 Code	ARE
[Ref.: #20672]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Coastal zone sand
[Ref.: #67770]	Geographic location (country and/or sea, region)	Dubai
[Ref.: #67770]	Country	United Arab Emirates
[Ref.: #67770]	Country ISO 3 Code	ARE
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC010491 (>99% sequence identity) for Mycolicibacterium from Microbeatlas

Aquatic Samples	312
Soil Samples	382
Animal Samples	227
Plant Samples	63
Total Samples	984

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20672]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycobacterium arabiense strain YIM 121001 16S-23S ribosomal RNA intergenic spacer, complete sequence	KC010493	433	ENA	1286181 tax ID
[Ref.: #20672]	Mycobacterium arabiense strain YIM 121001 16S ribosomal RNA gene, partial sequence	KC010491	1535	ENA	1286181 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacterium arabiense JCM 18538	GCA_010731815	complete	GenBank	1286181 tax ID	*
[Ref.: #66792]	Mycolicibacterium arabiense strain JCM 18538	1286181.8	wgs	PATRIC	1286181 tax ID	*
[Ref.: #66792]	Mycolicibacterium arabiense JCM 18538	2888232652	complete	JGI IMG/M	1286181 tax ID	*
[Ref.: #66792]	Mycolicibacterium arabiense DSM 45768	GCA_025823225	contig	GenBank	1286181 tax ID	*

[Ref.: #20672]	GC-content	62.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31044]	GC-content	62.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycolicibacterium arabiense JCM 18538 NCBI: GCA_010731815.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycolicibacterium arabiense JCM 18538 NCBI: GCA_010731815.2
[Ref.: #69480]	motile	no	90.224	no
[Ref.: #69480]	flagellated	no	97.639	yes
[Ref.: #69480]	gram-positive	yes	90.623	no
[Ref.: #69480]	anaerobic	no	99.471	no
[Ref.: #69480]	aerobic	yes	89.273	no
[Ref.: #69480]	halophile	no	93.837	yes
[Ref.: #69480]	spore-forming	no	82.859	no
[Ref.: #69480]	glucose-util	yes	87.067	no
[Ref.: #69480]	thermophile	no	99.661	no
[Ref.: #69480]	glucose-ferment	no	90.765	no

Availability in culture collections External links

[Ref.: #20672]

Culture collection no.

DSM 45768, JCM 18538, YIM 121001

[Ref.: #88180]

SI-ID 406386

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycolicibacterium lacusdiani sp. nov., an Attached Bacterium of Microcystis aeruginosa.	Xiao Y, Chen J, Chen M, Deng SJ, Xiong ZQ, Tian BY, Zhang BH	Front Microbiol	10.3389/fmicb.2022.861291	2022	*
Phylogeny	Mycobacterium sediminis sp. nov. and Mycobacterium arabiense sp. nov., two rapidly growing members of the genus Mycobacterium.	Zhang DF, Chen X, Zhang XM, Zhi XY, Yao JC, Jiang Y, Xiong Z, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.050567-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20672

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45768

#31044

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27374 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88180

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406386.1 )

#27374

IJSEM 4081 2013 ( DOI 10.1099/ijs.0.050567-0 , PubMed 23728378 )

* These data were automatically processed and therefore are not curated

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Mycolicibacterium arabiense JCM 18538

Mycolicibacterium arabiense JCM 18538

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