Name: Methanosarcina soligelidi SMA-21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24170

Type strain:

Species: Methanosarcina soligelidi

Strain Designation: SMA-21

Culture col. no.: DSM 26065, JCM 18468

Strain history: <- D. Wagner, Helmholtz Centre Potsdam, GFZ German Res. Centre for Geosciences, Germany; SMA-21 <- D. Wagner {2004}

NCBI tax ID(s): 1036677 (species)

SI-ID 9425

LMG 15061, DSM 20065, NCFB 2477, NCIMB 702477, NCDO2477, CIP 107090, DSM 26065, JCM 18468

Section

Methanosarcina soligelidi SMA-21 is an anaerobe, mesophilic archaeon that was isolated from permafrost-affected soil .

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanosarcina*
	Species	**Methanosarcina soligelidi**
	Full Scientific Name (LPSN)	Methanosarcina soligelidi Wagner et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #21023]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21023]

Culture medium

METHANOSARCINA BARKERI MEDIUM (DSMZ Medium 120a)

[Ref.: #21023]

Culture medium growth

[Ref.: #21023]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21023]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21023]			growth	28 °C

[Ref.: #21023]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21023]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21023]	Sample type/isolated from	permafrost-affected soil (Psammentic Aquorthel)
[Ref.: #21023]	Host species	Psammentic Aquorthel
[Ref.: #21023]	Geographic location (country and/or sea, region)	Siberia, Lena Delta, Samoylov Island (72° 22' N 126° 28' E),
[Ref.: #21023]	Country	Russia
[Ref.: #21023]	Country ISO 3 Code	RUS
[Ref.: #21023]	Continent	Asia
[Ref.: #21023]	Geographic location	72.3667°/126.4670°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Permafrost
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21023]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21023]	Methanosarcina soligelidi strain SMA-21 16S ribosomal RNA gene, partial sequence	JF812255	1337	ENA	1036677 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanosarcina soligelidi SMA-21	GCA_000744315	contig	GenBank	1036677 tax ID	*
[Ref.: #66792]	Methanosarcina soligelidi SMA-21	2576861399	draft	JGI IMG/M	1036677 tax ID	*

[Ref.: #21023]	GC-content	40.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #21023]	GC-content	41.5 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #21023]

Culture collection no.

DSM 26065, JCM 18468

[Ref.: #88125]

SI-ID 9425

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Response of Methanogenic Archaea from Siberian Permafrost and Non-permafrost Environments to Simulated Mars-like Desiccation and the Presence of Perchlorate.	Serrano P, Alawi M, de Vera JP, Wagner D	Astrobiology	10.1089/ast.2018.1877	2019	*
Phylogeny	Enhanced Radiation Resistance of Methanosarcina soligelidi SMA-21, a New Methanogenic Archaeon Isolated from a Siberian Permafrost-Affected Soil in Direct Comparison to Methanosarcina barkeri.	Morozova D, Moeller R, Rettberg P, Wagner D	Astrobiology	10.1089/ast.2015.1319	2015	*
Phylogeny	Methanosarcina soligelidi sp. nov., a desiccation- and freeze-thaw-resistant methanogenic archaeon from a Siberian permafrost-affected soil.	Wagner D, Schirmack J, Ganzert L, Morozova D, Mangelsdorf K	Int J Syst Evol Microbiol	10.1099/ijs.0.046565-0	2013	*
Genetics	Genome Sequence of Methanosarcina soligelidi SMA-21, Isolated from Siberian Permafrost-Affected Soil.	Alawi M, Shapiro N, Woyke T, Horn F, Bakermans C, Wagner D	Genome Announc	10.1128/genomeA.00270-15	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21023

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26065

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88125

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9425.1 )

* These data were automatically processed and therefore are not curated

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