Lacticaseibacillus porcinae (DSM 28071, CCUG 62266, LMG 26767)

Name: Lacticaseibacillus porcinae (DSM 28071, CCUG 62266, LMG 26767)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24130

Type strain

Strain Designation R-42633

Culture col. no. DSM 28071 CCUG 62266 LMG 26767 R-42633 KCTC 21027 1 more

NCBI tax ID(s) 1123687

Special Collections DSMZ CCUG JCM KCTC Literature strains

History <- LMG; LMG 26767 <- B. T. Le, Hanoi Vietnam CCUG 62266 <-- B. T. Le R-42633. <- CCUG <- BT Le, Hanoi, Vietnam

Links

Lacticaseibacillus porcinae R-42633 is a microaerophile, Gram-positive, ovoid-shaped bacterium that was isolated from nem chua samples .

Gram-positive ovoid-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 370591

JCM 19617,KCTC 21027,LMG 26767,CCUG 62266,DSM 28071

@ref 20215

Last LPSN update 2026-02-09 11:23:53

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lacticaseibacillus

Species Lacticaseibacillus porcinae

Full scientific name Lacticaseibacillus porcinae (Nguyen et al. 2013) Zheng et al. 2020

Synonyms (1)

Lactobacillus porcinae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30777	positive	1.75 µm	1 µm	ovoid-shaped
67771
67771	positive
125438					91.5
125438	positive				93.537

Pigmentation

30777

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20990	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20990	positive	growth	30
30777	positive	growth	15-37
62808	positive	growth	37
67770	positive	growth	37
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
30777	positive	growth	3.9-5.4	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
20990	microaerophile
30777	microaerophile
62808	microaerophile
67771	facultative anaerobe
125439	obligate aerobe	98.4

Spore formation

@ref	Spore formation	Confidence
30777
67771
125439		92.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30777	NaCl	positive	growth	0-6 %

Observation

30777

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
30777	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
30777	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
30777	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
30777	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
30777	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
30777	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
30777	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
30777	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
30777	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
30777	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
30777	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
30777	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
20990	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Meat

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
20990	nem chua samples (fermented pork)		Thanhhoa city	Vietnam	VNM	Asia
62808	Food,Nem chua (fermented pork)	2009-08-30	Thanhhoa	Vietnam	VNM	Asia
67770	Traditional Vietnamese nem chua		Thanhhoa City	Vietnam	VNM	Asia
67771	From nem chua samples(fermented pork)		Thanhhoa city	Vietnam	VNM	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20990	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM394630v1 assembly for Lacticaseibacillus porcinae JCM 19617	contig	GCA_003946305	1123687.3	3004707826	1123687	71.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20990	Lactobacillus porcinae partial 16S rRNA gene, type strain R-42633T, isolate DH 7.6	HE616585	1507		1123687

GC content

@ref	GC-content (mol%)	Method
20990	47.6
67770	47.6	high performance liquid chromatography (HPLC)
67770	47.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacticaseibacillus porcinae JCM 19617
NCBI: GCA_003946305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no
125439	gram_stain	BacteriaNetⓘ	positive	72.60	no
125439	motility	BacteriaNetⓘ	yes	50.70	no
125439	spore_formation	BacteriaNetⓘ	no	92.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus porcinae strain JCM 19617
PATRIC: 1123687.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.54	no
125438	anaerobic	anaerobicⓘ	no	80.88	no
125438	spore-forming	spore-formingⓘ	no	86.86	yes
125438	aerobic	aerobicⓘ	no	97.50	yes
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Lacticaseibacillus salsurae sp. nov. and Levilactobacillus muriae sp. nov., isolated from traditional Chinese pickle.	Song ST, Wang TY, Zhu XY, Gu CT.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006816	2025
Phylogeny	Lacticaseibacillus jixiensis sp. nov., Isolated from Traditional Chinese Pickle.	Song ST, Li CY, Gu CT.	Curr Microbiol	10.1007/s00284-024-03902-7	2024
Phylogeny	Lacticaseibacillus absianus sp. nov., isolated from the cecum of a mini-pig.	Bai L, Paek J, Shin Y, Park HY, Chang YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004752	2021
Phylogeny	Lactobacillus porcinae sp. nov., isolated from traditional Vietnamese nem chua.	Nguyen DTL, Cnockaert M, Van Hoorde K, De Brandt E, Snauwaert I, Snauwaert C, De Vuyst L, Le BT, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.044123-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20990	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28071
#27108	IJSEM 1754 2013 ( DOI 10.1099/ijs.0.044123-0 , PubMed 22941299 )
#30777	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27108
#62808	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62266
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacticaseibacillus porcinae (DSM 28071, CCUG 62266, LMG 26767)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003946305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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