Lactobacillus delbrueckii subsp. allosunkii (DSM 24966, JCM 17838, KCTC 15515)

Name: Lactobacillus delbrueckii subsp. allosunkii (DSM 24966, JCM 17838, KCTC 15515)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24129

Type strain

Culture col. no. DSM 24966 JCM 17838 KCTC 15515 YIT 11221

NCBI tax ID(s) 1050107

Special Collections DSMZ JCM KCTC

History <- K. Watanabe, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan; YIT 11221 K. Watanabe YIT 11221. <- DSM <- K Watanabe, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan, YIT 11221

Links

Lactobacillus delbrueckii subsp. allosunkii DSM 24966 is a microaerophile, rod-shaped bacterium that was isolated from sunki, Japanese traditional fermented vegetable.

rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401309

LMG 29182,JCM 17838,KCTC 15515,DSM 24966

@ref 20215

Last LPSN update 2026-02-09 11:23:53

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus delbrueckii subsp. allosunkii

Full scientific name Lactobacillus delbrueckii subsp. allosunkii Goo and Li 2024

Synonyms (1)

Lactobacillus delbrueckii subsp. sunkii

Morphology

Cell morphology

@ref	Cell shape	Gram stain	Confidence
67771	rod-shaped
67771		positive
125438			95

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20989	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20989	positive	growth	30
67770	positive	growth	30
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
20989	microaerophile
67771	microaerophile
125439	anaerobe	99.2

Spore formation

@ref	Spore formation	Confidence
67771
125439		95

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
20989	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+/-	-	+/-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Vegetable (incl. Grains)
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20989	sunki, Japanese traditional fermented vegetable	Nagano prefecture	Japan	JPN	Asia
67770	Sunki, traditional Japanese pickles	Kiso country, Nagano Pref.	Japan	JPN	Asia
67771	From sunki, Japanese traditional fermented vegetable(pickle)	the Kiso country, Nagano prefecture	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20989	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM188896v1 assembly for Lactobacillus delbrueckii subsp. allosunkii JCM 17838	complete	GCA_001888965	1050107.4	2721755462	1050107	97.47
67770	ASM119000v1 assembly for Lactobacillus delbrueckii subsp. allosunkii JCM 17838	contig	GCA_001190005	1050107.3	2648501706	1050107	72.33

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20989	Lactobacillus delbrueckii subsp. sunkii gene for 16S rRNA, partial sequence, strain: YIT 11221	AB641833	1556	1050107
67770	Lactobacillus delbrueckii subsp. sunkii JCM 17838 gene for 16S rRNA, partial sequence	LC520000	1453	1050107
124043	Lactobacillus delbrueckii subsp. sunkii JCM17838 gene for 16S rRNA, partial sequence.	LC685630	1435	1050107

GC content

@ref	GC-content (mol%)	Method
20989	51.0	high performance liquid chromatography (HPLC)
67770	50.1	genome sequence analysis
67770	51	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus delbrueckii subsp. sunkii JCM 17838
NCBI: GCA_001888965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.20	no
125439	gram_stain	BacteriaNetⓘ	negative	58.80	no
125439	motility	BacteriaNetⓘ	no	65.70	no
125439	spore_formation	BacteriaNetⓘ	no	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus delbrueckii subsp. sunkii JCM 17838
NCBI: GCA_001888965.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.35	yes
125438	anaerobic	anaerobicⓘ	no	76.93	yes
125438	aerobic	aerobicⓘ	no	97.70	yes
125438	spore-forming	spore-formingⓘ	no	88.49	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	95.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Antimicrobial Susceptibility of Lactobacillus delbrueckii subsp. lactis from Milk Products and Other Habitats.	Shani N, Oberhaensli S, Berthoud H, Schmidt RS, Bachmann HP.	Foods	10.3390/foods10123145	2021
	Lactobacillus delbrueckii subsp. allosunkii and lactis as emerging human uropathogens in elderly patients.	Guerin F, Sassi M, Gravey F, Zouari A, Quenet B, Lecourt M, Ract P, Michaux C, Auzou M, Isnard C, Cattoir V.	J Clin Microbiol	10.1128/jcm.02072-24	2025
Genetics	Genome mining approach reveals the CRISPR-Cas systems features and characteristics in Lactobacillus delbrueckii strains.	Panahi B, Rostampour M, Ghaffari MR, Nami Y.	Heliyon	10.1016/j.heliyon.2024.e39920	2024
	Genomic Characterization of Wild Lactobacillus delbrueckii Strains Reveals Low Diversity but Strong Typicity.	Grizon A, Theil S, Helinck S, Gerber P, Bonnarme P, Chassard C.	Microorganisms	10.3390/microorganisms12030512	2024
	Comparison of Activity of Commercial Protective Cultures and Thermophilic Lactic Acid Bacteria against Listeria monocytogenes: A New Perspective to Improve the Safety of Sardinian PDO Cheeses.	Meloni MP, Piras F, Siddi G, Cabras D, Comassi E, Lai R, McAuliffe O, De Santis EPL, Scarano C.	Foods	10.3390/foods12061182	2023
Genetics	Draft genome sequence of Lactobacillus delbrueckii subsp. bulgaricus LBP UFSC 2230: a tool for preliminary identification of enzymes involved in CLA metabolism.	Kuhl GC, Mazzon RR, Duarte RTD, De Dea Lindner J.	Braz J Microbiol	10.1007/s42770-021-00479-2	2021
Phylogeny	Identification and Monitoring of Lactobacillus delbrueckii Subspecies Using Pangenomic-Based Novel Genetic Markers.	Kim E, Cho EJ, Yang SM, Kim HY.	J Microbiol Biotechnol	10.4014/jmb.2009.09034	2021
	Probiogenomics of Lactobacillus delbrueckii subsp. lactis CIDCA 133: In Silico, In Vitro, and In Vivo Approaches.	de Jesus LCL, Drumond MM, Aburjaile FF, Sousa TJ, Coelho-Rocha ND, Profeta R, Brenig B, Mancha-Agresti P, Azevedo V.	Microorganisms	10.3390/microorganisms9040829	2021
Metabolism	The MpsAB Bicarbonate Transporter Is Superior to Carbonic Anhydrase in Biofilm-Forming Bacteria with Limited CO₂ Diffusion.	Fan SH, Matsuo M, Huang L, Tribelli PM, Gotz F.	Microbiol Spectr	10.1128/spectrum.00305-21	2021
Genetics	Differentiation of Lacticaseibacillus zeae Using Pan-Genome Analysis and Real-Time PCR Method Targeting a Unique Gene.	Kim E, Yang SM, Kim HY.	Foods	10.3390/foods10092112	2021
Phylogeny	Classification of Latilactobacillus sakei subspecies based on MALDI-TOF MS protein profiles using machine learning models.	Kim E, Yang S-M, Lee S-Y, Jung D-H, Kim H-Y.	Microbiol Spectr	10.1128/spectrum.03668-23	2024
Phylogeny	Lactobacillus delbrueckii subsp. sunkii subsp. nov., isolated from sunki, a traditional Japanese pickle.	Kudo Y, Oki K, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijs.0.037051-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20989	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24966
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactobacillus delbrueckii subsp. allosunkii (DSM 24966, JCM 17838, KCTC 15515)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001888965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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