Name: Terrabacter ginsenosidimutans DSM 21007
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24112

Type strain:

Species: Terrabacter ginsenosidimutans

Culture col. no.: DSM 21007, KCTC 19421, Gsoil 3082, JCM 17125

Strain history: W.-T. Im Gsoil 3082.

NCBI tax ID(s): 490575 (species)

SI-ID 397536

DSM 21007

Special Collections

Section

When using BacDive for research please cite our paper

Terrabacter ginsenosidimutans DSM 21007 is a mesophilic bacterium that was isolated from soil of a ginseng farm.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Terrabacter*
	Species	**Terrabacter ginsenosidimutans**
	Full Scientific Name (LPSN)	Terrabacter ginsenosidimutans An et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20858]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20858]

Culture medium growth

[Ref.: #20858]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20858]

Culture medium composition

expand / minimize

[Ref.: #20858]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #20858]

Culture medium growth

[Ref.: #20858]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20858]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20858]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Enzymes	Enzyme	EC number
[Ref.: #67770]		beta-glucosidase	3.2.1.21

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20858]	Sample type/isolated from	soil of a ginseng farm
[Ref.: #20858]	Geographic location (country and/or sea, region)	Pocheon Province (37°58'22''N, 127°15'27''E)
[Ref.: #20858]	Country	Republic of Korea
[Ref.: #20858]	Country ISO 3 Code	KOR
[Ref.: #20858]	Continent	Asia
[Ref.: #20858]	Geographic location	37.9728°/127.2570°

[Ref.: #67770]	Sample type/isolated from	Soil of a ginseng farm
[Ref.: #67770]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU332827 (>99% sequence identity) for Terrabacter from Microbeatlas

Aquatic Samples	491
Soil Samples	2840
Animal Samples	1084
Plant Samples	134
Total Samples	4549

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20858]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20858]	Terrabacter ginsenosidimutans strain Gsoil 3082 16S ribosomal RNA gene, partial sequence	EU332827	1485	GenBank ENA	490575 tax ID

[Ref.: #20858]

GC-content

69.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20858]

Culture collection no.

DSM 21007, KCTC 19421, Gsoil 3082, JCM 17125

[Ref.: #88072]

SI-ID 397536

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Gram-Scale Production of Ginsenoside F1 Using a Recombinant Bacterial beta-Glucosidase.	An DS, Cui CH, Siddiqi MZ, Yu HS, Jin FX, Kim SG, Im WT	J Microbiol Biotechnol	10.4014/jmb.1703.03006	2017	*
Enzymology	Identification and characterization of a novel Terrabacter ginsenosidimutans sp. nov. beta-glucosidase that transforms ginsenoside Rb1 into the rare gypenosides XVII and LXXV.	An DS, Cui CH, Lee HG, Wang L, Kim SC, Lee ST, Jin F, Yu H, Chin YW, Lee HK, Im WT, Kim SG	Appl Environ Microbiol	10.1128/AEM.00106-10	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20858

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21007

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88072

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397536.1 )

* These data were automatically processed and therefore are not curated

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