Terrabacter ginsenosidimutans (DSM 21007, KCTC 19421, Gsoil 3082)

Name: Terrabacter ginsenosidimutans (DSM 21007, KCTC 19421, Gsoil 3082)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24112

Type strain

Culture col. no. DSM 21007 KCTC 19421 Gsoil 3082 JCM 17125

NCBI tax ID(s) 490575

Special Collections DSMZ JCM KCTC

History <- S.-T. Lee, KAIST <- D.-S. An, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; Gsoil 3082 W.-T. Im Gsoil 3082.

Links

Terrabacter ginsenosidimutans DSM 21007 is a mesophilic prokaryote that was isolated from soil of a ginseng farm.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397536

KCTC 19421,JCM 17125,DSM 21007

@ref 20215

Last LPSN update 2026-02-09 11:23:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Intrasporangiaceae

Genus Terrabacter

Species Terrabacter ginsenosidimutans

Full scientific name Terrabacter ginsenosidimutans An et al. 2011

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20858	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
20858	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20858	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-8(H₄)

Enzymes

@ref	Value	Ec
67770	beta-glucosidase	3.2.1.21

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20858	soil of a ginseng farm	Pocheon Province (37°58'22''N, 127°15'27''E)	Republic of Korea	KOR	Asia	37.9728	127.257 37.9728/127.257
67770	Soil of a ginseng farm	Pocheon Province	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU332827 (>99% sequence identity) for Terrabacter from Microbeatlas

Aquatic Samples	491
Soil Samples	2840
Animal Samples	1084
Plant Samples	134
Total Samples	4549

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20858	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953942v1 assembly for Terrabacter ginsenosidimutans JCM 17125	scaffold	GCA_039539425	490575	71.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20858	Terrabacter ginsenosidimutans strain Gsoil 3082 16S ribosomal RNA gene, partial sequence	EU332827	1485		490575

GC content

@ref	GC-content (mol%)	Method
20858	69.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Purification and immobilization of beta-glucosidase using surface modified mesoporous silica Santa Barbara Amorphous 15 for eco-friendly preparation of sagittatoside A.	Yang YY, Jing SL, Shao JL, Chen JX, Zhang WF, Wan SY, Shen YP, Yang H, Yu W.	Nat Prod Bioprospect	10.1007/s13659-024-00471-x	2024
Enzymology	Transcriptome Profiling, Cloning, and Characterization of AnGlu04478, a Ginsenoside Hydrolyzing beta-Glucosidase from Aspergillus niger NG1306.	Jiang M, Zhu L, Xie S, Ren Z, Chen X, Liu M, Yin G.	Curr Microbiol	10.1007/s00284-024-04012-0	2024
Metabolism	Kinetics of a cloned special ginsenosidase hydrolyzing 3-O-glucoside of multi-protopanaxadiol-type ginsenosides, named ginsenosidase type III.	Jin XF, Yu HS, Wang DM, Liu TQ, Liu CY, An DS, Im WT, Kim SG, Jin FX.	J Microbiol Biotechnol	10.4014/jmb.1107.07066	2012
Enzymology	Production of Minor Ginsenosides C-K and C-Y from Naturally Occurring Major Ginsenosides Using Crude beta-Glucosidase Preparation from Submerged Culture of Fomitella fraxinea.	Kim DW, Lee WJ, Gebru YA, Upadhyaya J, Ko SR, Kim YH, Kim MK.	Molecules	10.3390/molecules26164820	2021
Metabolism	Enhanced Production of Gypenoside LXXV Using a Novel Ginsenoside-Transforming beta-Glucosidase from Ginseng-Cultivating Soil Bacteria and Its Anti-Cancer Property.	Cui CH, Kim DJ, Jung SC, Kim SC, Im WT.	Molecules	10.3390/molecules22050844	2017
Genetics	Genome sequencing of strain Cellulosimicrobium sp. TH-20 with ginseng biotransformation ability.	Zheng F, Zhang W, Chu X, Dai Y, Li J, Zhao H, Wen L, Yue H, Yu S.	3 Biotech	10.1007/s13205-017-0850-2	2017
Metabolism	High-density immobilization of a ginsenoside-transforming beta-glucosidase for enhanced food-grade production of minor ginsenosides.	Cui CH, Jeon BM, Fu Y, Im WT, Kim SC.	Appl Microbiol Biotechnol	10.1007/s00253-019-09951-4	2019
Metabolism	Exploration and Characterization of Novel Glycoside Hydrolases from the Whole Genome of Lactobacillus ginsenosidimutans and Enriched Production of Minor Ginsenoside Rg3(S) by a Recombinant Enzymatic Process.	Siddiqi MZ, Srinivasan S, Park HY, Im WT.	Biomolecules	10.3390/biom10020288	2020
	Synergistic production of 20(S)-protopanaxadiol from protopanaxadiol-type ginsenosides by beta-glycosidases from Dictyoglomus turgidum and Caldicellulosiruptor bescii.	Choi JH, Seo MJ, Shin KC, Lee KW, Oh DK.	AMB Express	10.1186/s13568-017-0524-9	2017
	Enzymatic Biotransformation of Ginsenoside Rb1 and Gypenoside XVII into Ginsenosides Rd and F2 by Recombinant beta-glucosidase from Flavobacterium johnsoniae.	Hong H, Cui CH, Kim JK, Jin FX, Kim SC, Im WT.	J Ginseng Res	10.5142/jgr.2012.36.4.418	2012
	Compound K Production from Red Ginseng Extract by beta-Glycosidase from Sulfolobus solfataricus Supplemented with alpha-L-Arabinofuranosidase from Caldicellulosiruptor saccharolyticus.	Shin KC, Choi HY, Seo MJ, Oh DK.	PLoS One	10.1371/journal.pone.0145876	2015
	Purification and characterization of a novel ginsenoside Rc-hydrolyzing beta-glucosidase from Armillaria mellea mycelia.	Upadhyaya J, Yoon MS, Kim MJ, Ryu NS, Song YE, Kim YH, Kim MK.	AMB Express	10.1186/s13568-016-0277-x	2016
Metabolism	Identification and characterization of a Mucilaginibacter sp. strain QM49 beta-glucosidase and its use in the production of the pharmaceutically active minor ginsenosides (S)-Rh1 and (S)-Rg2.	Cui CH, Liu QM, Kim JK, Sung BH, Kim SG, Kim SC, Im WT.	Appl Environ Microbiol	10.1128/aem.01150-13	2013
Enzymology	Identification and characterization of a ginsenoside-transforming beta-glucosidase from Pseudonocardia sp. Gsoil 1536 and its application for enhanced production of minor ginsenoside Rg2(S).	Du J, Cui CH, Park SC, Kim JK, Yu HS, Jin FX, Sun C, Kim SC, Im WT.	PLoS One	10.1371/journal.pone.0096914	2014
Metabolism	Gram-Scale Production of Ginsenoside F1 Using a Recombinant Bacterial beta-Glucosidase.	An DS, Cui CH, Siddiqi MZ, Yu HS, Jin FX, Kim SG, Im WT	J Microbiol Biotechnol	10.4014/jmb.1703.03006	2017
Enzymology	Identification and characterization of a novel Terrabacter ginsenosidimutans sp. nov. beta-glucosidase that transforms ginsenoside Rb1 into the rare gypenosides XVII and LXXV.	An DS, Cui CH, Lee HG, Wang L, Kim SC, Lee ST, Jin F, Yu H, Chin YW, Lee HK, Im WT, Kim SG	Appl Environ Microbiol	10.1128/AEM.00106-10	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20858	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21007
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Terrabacter ginsenosidimutans (DSM 21007, KCTC 19421, Gsoil 3082)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039539425

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media