Terrabacter carboxydivorans (DSM 27984, JCM 16259, KCCM 42922)

Name: Terrabacter carboxydivorans (DSM 27984, JCM 16259, KCCM 42922)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24113

Type strain

Strain Designation PY2

Culture col. no. DSM 27984 JCM 16259 KCCM 42922 PY2 KCTC 39579

NCBI tax ID(s) 619730

Special Collections DSMZ JCM KCTC Literature strains

History <- JCM; JCM 16259 <- M.-K. Kim; PY2 Y. M. Kim PY2.

Links

Terrabacter carboxydivorans PY2 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404084

KCTC 39579,JCM 16259,DSM 27984

@ref 20215

Last LPSN update 2026-02-09 11:23:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Intrasporangiaceae

Genus Terrabacter

Species Terrabacter carboxydivorans

Full scientific name Terrabacter carboxydivorans Kim et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
29780	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20859	RICH MEDIUM (DSMZ Medium 736)		Medium recipe at MediaDive	Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20859	positive	growth	28
29780	positive	growth	15-40
29780	positive	optimum	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
29780	positive	optimum	7
29780	positive	growth	04-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

29780

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29780	NaCl	positive	growth	0-7 %

Observation

67770

Observationquinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29780	17128 ChEBI	adipate	+	carbon source
29780	22599 ChEBI	arabinose	+	carbon source
29780	16947 ChEBI	citrate	+	carbon source
29780	27689 ChEBI	decanoate	+	carbon source
29780	24265 ChEBI	gluconate	+	carbon source
29780	17234 ChEBI	glucose	+	carbon source
29780	25115 ChEBI	malate	+	carbon source
29780	17306 ChEBI	maltose	+	carbon source
29780	29864 ChEBI	mannitol	+	carbon source
29780	37684 ChEBI	mannose	+	carbon source
29780	506227 ChEBI	N-acetylglucosamine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29780	acid phosphatase	+	3.1.3.2
29780	alpha-galactosidase	+	3.2.1.22
29780	catalase	+	1.11.1.6
29780	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20859	soil	roadside at Yonsei University, Seoul	Republic of Korea	KOR	Asia
67770	Soil from a roadside at Yonsei Univ.	Seoul	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ717334 (>99% sequence identity) for Terrabacter from Microbeatlas

Aquatic Samples	491
Soil Samples	2840
Animal Samples	1084
Plant Samples	134
Total Samples	4549

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20859	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953203v1 assembly for Terrabacter carboxydivorans JCM 16259	scaffold	GCA_039532035	619730	59.24

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20859	Terrabacter carboxydivorans strain PY2 16S ribosomal RNA gene, partial sequence	FJ717334	1514		619730

GC content

@ref	GC-content (mol%)	Method
20859	75.6
67770	75.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrabacter carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete.	Kim SM, Park SW, Park ST, Kim YM	Int J Syst Evol Microbiol	10.1099/ijs.0.020826-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20859	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27984
#26160	IJSEM 482 2011 ( DOI 10.1099/ijs.0.020826-0 , PubMed 20207805 )
#29780	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26160
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Terrabacter carboxydivorans (DSM 27984, JCM 16259, KCCM 42922)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039532035

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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