Name: Zunongwangia mangrovi P2E16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24050

Type strain:

Species: Zunongwangia mangrovi

Strain Designation: P2E16

Culture col. no.: DSM 24499, KCTC 23496, LMG 26237, UCCCB40

Strain history: Rameshkumar N. National Institute for Interdisciplinary Science and Technology (CSIR) and Hokkaido University

NCBI tax ID(s): 1334022 (species)

Section

Zunongwangia mangrovi P2E16 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from rhizosphere of the mangrove Avicennia marina.

rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Zunongwangia*
	Species	**Zunongwangia mangrovi**
	Full Scientific Name (LPSN)	Zunongwangia mangrovi Rameshkumar et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

[Ref.: #21173]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67771]	growth	25-28 °C
[Ref.: #67772]	optimum	25-28 °C
[Ref.: #67772]	minimum	20 °C
[Ref.: #67772]	maximum	37 °C

[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	mesophilic

		pH
[Ref.: #67772]	maximum	9.0
[Ref.: #67772]	minimum	6.0
[Ref.: #67772]	optimum	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

[Ref.: #67771]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21173]	Sample type/isolated from	rhizosphere of the mangrove Avicennia marina
[Ref.: #21173]	Host species	Avicennia marina
[Ref.: #21173]	Geographic location (country and/or sea, region)	Tamil Nadu, Devipattinam
[Ref.: #21173]	Country	India
[Ref.: #21173]	Country ISO 3 Code	IND
[Ref.: #21173]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From mangrove rhizosphere
[Ref.: #67771]	Geographic location (country and/or sea, region)	Tamil Nadu
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia

[Ref.: #67772]	Sample type/isolated from	Rhizosphere of the mangrove Avicennia marina
[Ref.: #67772]	Sampling date	2010
[Ref.: #67772]	Geographic location (country and/or sea, region)	Tamil Nadu, Devipattinam
[Ref.: #67772]	Country	India
[Ref.: #67772]	Country ISO 3 Code	IND
[Ref.: #67772]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC907713 (>99% sequence identity) for Zunongwangia mangrovi from Microbeatlas

Aquatic Samples	947
Soil Samples	22
Animal Samples	41
Plant Samples	8
Total Samples	1018

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21173]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21173]	Zunongwangia mangrovi strain P2E16 16S ribosomal RNA gene, partial sequence	KC907713	1470	ENA	1334022 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Zunongwangia mangrovi DSM 24499	GCA_900112105	contig	GenBank	1334022 tax ID
[Ref.: #66792]	Zunongwangia mangrovi strain DSM 24499	1334022.3	wgs	PATRIC	1334022 tax ID	*
[Ref.: #66792]	Zunongwangia mangrovi DSM 24499	2622736505	draft	JGI IMG/M	1334022 tax ID	*

[Ref.: #21173]	GC-content	34.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	34.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zunongwangia mangrovi strain DSM 24499 PATRIC: 1334022.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zunongwangia mangrovi strain DSM 24499 PATRIC: 1334022.3
[Ref.: #69480]	motile	no	87.837	yes
[Ref.: #69480]	gram-positive	no	97.828	yes
[Ref.: #69480]	anaerobic	no	99.319	yes
[Ref.: #69480]	halophile	yes	52.8	no
[Ref.: #69480]	spore-forming	no	95.632	yes
[Ref.: #69480]	thermophile	no	99.628	yes
[Ref.: #69480]	glucose-util	yes	90.855	no
[Ref.: #69480]	flagellated	no	93.512	yes
[Ref.: #69480]	aerobic	yes	91.568	yes
[Ref.: #69480]	glucose-ferment	no	87.782	no

Availability in culture collections External links

[Ref.: #21173]

Culture collection no.

DSM 24499, KCTC 23496, LMG 26237, UCCCB40

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia.	Fidalgo C, Martins R, Proenca DN, Morais PV, Alves A, Henriques I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002069	2017	*
Phylogeny	Zunongwangia mangrovi sp. nov., isolated from mangrove (Avicennia marina) rhizosphere, and emended description of the genus Zunongwangia.	Rameshkumar N, Krishnan R, Lang E, Matsumura Y, Sawabe T, Sawabe T	Int J Syst Evol Microbiol	10.1099/ijs.0.053512-0	2013	*
Phylogeny	Zunongwangia flava sp. nov., belonging to the family Flavobacteriaceae, isolated from Salicornia europaea.	Cho ES, Cha IT, Choi HJ, Roh SW, Nam YD, Seo SM, Seo MJ	J Microbiol	10.1007/s12275-018-8231-z	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21173

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24499

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Zunongwangia mangrovi strain DSM 24499

Zunongwangia mangrovi strain DSM 24499

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