Strain identifier

BacDive ID: 24050

Type strain: Yes

Species: Zunongwangia mangrovi

Strain Designation: P2E16

Strain history: Rameshkumar N. National Institute for Interdisciplinary Science and Technology (CSIR) and Hokkaido University

NCBI tax ID(s): 1334022 (species)

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General

@ref: 21173

BacDive-ID: 24050

DSM-Number: 24499

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, rod-shaped

description: Zunongwangia mangrovi P2E16 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from rhizosphere of the mangrove Avicennia marina.

NCBI tax id

  • NCBI tax id: 1334022
  • Matching level: species

strain history

@refhistory
21173<- N. Ramesh Kumar, NCCS Complex, Univ. of Pune Campus, India; P2E16
67771<- N Ramesh Kumar, MCCP, Pune Univ., India
67772Rameshkumar N. National Institute for Interdisciplinary Science and Technology (CSIR) and Hokkaido University

doi: 10.13145/bacdive24050.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Zunongwangia
  • species: Zunongwangia mangrovi
  • full scientific name: Zunongwangia mangrovi Rameshkumar et al. 2014

@ref: 21173

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Zunongwangia

species: Zunongwangia mangrovi

full scientific name: Zunongwangia mangrovi Rameshkumar et al. 2014

strain designation: P2E16

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stainconfidence
67771rod-shapedno
67771negative
69480negative99.985

colony morphology

  • @ref: 21173
  • incubation period: 2-3 days

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67771positivegrowth25-28mesophilic
67772positiveoptimum25-28mesophilic
67772positiveminimum20psychrophilic
67772positivemaximum37mesophilic

culture pH

@refabilitytypepHPH range
67772positiveoptimum7.0-8.0
67772positivemaximum9.0alkaliphile
67772positiveminimum6.0

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
67771no
69481no100
69480no99.996

observation

  • @ref: 67771
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling date
21173rhizosphere of the mangrove Avicennia marinaAvicennia marinaTamil Nadu, DevipattinamIndiaINDAsia
67771From mangrove rhizosphereTamil NaduIndiaINDAsia
67772Rhizosphere of the mangrove Avicennia marinaTamil Nadu, DevipattinamIndiaINDAsia2010

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Host#Plants#Tree
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_35238.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_1827;97_2195;98_26020;99_35238&stattab=map
  • Last taxonomy: Zunongwangia mangrovi
  • 16S sequence: KC907713
  • Sequence Identity:
  • Total samples: 1018
  • soil counts: 22
  • aquatic counts: 947
  • animal counts: 41
  • plant counts: 8

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
211731Risk group (German classification)
677721

Sequence information

16S sequences

  • @ref: 21173
  • description: Zunongwangia mangrovi strain P2E16 16S ribosomal RNA gene, partial sequence
  • accession: KC907713
  • length: 1470
  • database: ena
  • NCBI tax ID: 1334022

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zunongwangia mangrovi strain DSM 244991334022.3wgspatric1334022
66792Zunongwangia mangrovi DSM 244992622736505draftimg1334022
67772Zunongwangia mangrovi DSM 24499GCA_900112105contigncbi1334022

GC content

@refGC-contentmethod
2117334.3high performance liquid chromatography (HPLC)
6777134.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.837yes
gram-positiveno97.828yes
anaerobicno99.319yes
halophileyes52.8no
spore-formingno95.632yes
thermophileno99.628yes
glucose-utilyes90.855no
flagellatedno93.512yes
aerobicyes91.568yes
glucose-fermentno87.782no

External links

@ref: 21173

culture collection no.: DSM 24499, KCTC 23496, LMG 26237, UCCCB40

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24126636Zunongwangia mangrovi sp. nov., isolated from mangrove (Avicennia marina) rhizosphere, and emended description of the genus Zunongwangia.Rameshkumar N, Krishnan R, Lang E, Matsumura Y, Sawabe T, Sawabe TInt J Syst Evol Microbiol10.1099/ijs.0.053512-02013Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny28853694Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia.Fidalgo C, Martins R, Proenca DN, Morais PV, Alves A, Henriques IInt J Syst Evol Microbiol10.1099/ijsem.0.0020692017Amaranthaceae/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsEnzymology
Phylogeny30361977Zunongwangia flava sp. nov., belonging to the family Flavobacteriaceae, isolated from Salicornia europaea.Cho ES, Cha IT, Choi HJ, Roh SW, Nam YD, Seo SM, Seo MJJ Microbiol10.1007/s12275-018-8231-z2018Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Phosphatidylethanolamines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/analogs & derivatives/analysis, Water MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21173Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24499Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24499)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
67772Curators of the UCCCBhttps://ucccb.uc.pt/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1