Name: Chryseobacterium zeae JM-1085
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24045

Type strain:

Species: Chryseobacterium zeae

Strain Designation: JM-1085

Culture col. no.: DSM 27623, CCM 8491, LMG 27809, CIP 110648

Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM-1085

NCBI tax ID(s): 1416779 (species)

SI-ID 390471

LMG 27809, CCM 8491, DSM 27623, CIP 110648

Section

Chryseobacterium zeae JM-1085 is a mesophilic, Gram-negative bacterium that was isolated from surface-sterilized stem of 10-week-old sweet corn .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium zeae**
	Full Scientific Name (LPSN)	Chryseobacterium zeae Kämpfer et al. 2014

Synonym

Epilithonimonas zeae

Information on morphological and physiological properties Morphology

[Ref.: #124023]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.979

[Ref.: #124023]	Cell shape	rod-shaped

[Ref.: #124023]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #32771]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #32771]

Culture medium growth

[Ref.: #32771]

Culture medium composition

expand / minimize

[Ref.: #20940]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20940]

Culture medium growth

[Ref.: #20940]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20940]

Culture medium composition

expand / minimize

[Ref.: #124023]

Culture medium

CIP Medium 72

[Ref.: #124023]

Culture medium growth

[Ref.: #124023]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #20940]			growth	28 °C
[Ref.: #32771]			growth	30 °C

[Ref.: #20940]	Temperature range	mesophilic
[Ref.: #32771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20940]	Sample type/isolated from	surface-sterilized stem of 10-week-old sweet corn (Zea mays)
[Ref.: #20940]	Host species	Zea mays
[Ref.: #20940]	Geographic location (country and/or sea, region)	Alabama, Macon county, Tallassee, E.V. Smith Research Center, Plant Breeding Unit facility
[Ref.: #20940]	Country	USA
[Ref.: #20940]	Country ISO 3 Code	USA
[Ref.: #20940]	Continent	North America

[Ref.: #124023]	Sample type/isolated from	Environment, Soil sample
[Ref.: #124023]	Country	United States of America
[Ref.: #124023]	Country ISO 3 Code	USA
[Ref.: #124023]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG738135 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	8
Soil Samples	8
Animal Samples	17
Plant Samples	3
Total Samples	36

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20940]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #124023]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20940]	Chryseobacterium zeae partial 16S rRNA gene, type strain JM-1085T	HG738135	1440	ENA	1416779 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Epilithonimonas zeae DSM 27623	GCA_900141765	contig	GenBank	1416779 tax ID	*
[Ref.: #66792]	Chryseobacterium zeae strain DSM 27623	1416779.3	wgs	PATRIC	1416779 tax ID	*
[Ref.: #66792]	Chryseobacterium zeae DSM 27623	2695421044	draft	JGI IMG/M	1416779 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium zeae strain DSM 27623 PATRIC: 1416779.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium zeae strain DSM 27623 PATRIC: 1416779.3
[Ref.: #69480]	motile	no	90.941	no
[Ref.: #69480]	gram-positive	no	98.06	no
[Ref.: #69480]	anaerobic	no	99.621	no
[Ref.: #69480]	halophile	no	94.216	no
[Ref.: #69480]	spore-forming	no	96.075	no
[Ref.: #69480]	thermophile	no	99.819	yes
[Ref.: #69480]	glucose-util	yes	87.168	no
[Ref.: #69480]	aerobic	yes	90.817	no
[Ref.: #69480]	flagellated	no	96.611	no
[Ref.: #69480]	glucose-ferment	no	90.777	no

Availability in culture collections External links

[Ref.: #20940]

Culture collection no.

DSM 27623, CCM 8491, LMG 27809, CIP 110648

[Ref.: #88018]

SI-ID 390471

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium chungangensis sp. nov., a bacterium isolated from soil of sweet gourd garden.	Huq MA	Arch Microbiol	10.1007/s00203-017-1469-8	2017	*
Phylogeny	Chryseobacterium solani sp. nov., isolated from field-grown eggplant rhizosphere soil.	Du J, Ngo HTT, Won K, Kim KY, Jin FX, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000266	2015	*
Phylogeny	Chryseobacterium polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Chryseobacterium.	Chen XY, Zhao R, Chen ZL, Liu L, Li XD, Li YH	Antonie Van Leeuwenhoek	10.1007/s10482-014-0338-6	2014	*
Phylogeny	Chryseobacterium zeae sp. nov., Chryseobacterium arachidis sp. nov., and Chryseobacterium geocarposphaerae sp. nov. isolated from the rhizosphere environment.	Kampfer P, McInroy JA, Glaeser SP	Antonie Van Leeuwenhoek	10.1007/s10482-013-0101-4	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20940

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27623

#32771 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88018

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390471.1 )

#124023 Collection of Institut Pasteur ; Curators of the CIP; CIP 110648
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium zeae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Chryseobacterium zeae strain DSM 27623

Chryseobacterium zeae strain DSM 27623

Change proposal

Change proposal