Name: Chryseobacterium geocarposphaerae 91A-561
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24043

Type strain:

Species: Chryseobacterium geocarposphaerae

Strain Designation: 91A-561

Culture col. no.: DSM 27617, CCM 8488, LMG 27811, CIP 110644

Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 91A-561

NCBI tax ID(s): 1416776 (species)

SI-ID 390473

LMG 27811, CCM 8488, DSM 27617, CIP 110644

Other strains from Chryseobacterium geocarposphaerae

C. geocarposphaerae 91A-576, DSM 27618, CCM 8487, LMG ...
C. geocarposphaerae 91A-576, CIP 110645

Section

Chryseobacterium geocarposphaerae 91A-561 is a mesophilic bacterium that was isolated from geocarposphere of very immature peanuts .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium geocarposphaerae**
	Full Scientific Name (LPSN)	Chryseobacterium geocarposphaerae Kämpfer et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #119601]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #119601]	Cell shape	rod-shaped

[Ref.: #119601]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.227

Information on culture and growth conditions Culture and growth conditions

[Ref.: #32770]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #32770]

Culture medium growth

[Ref.: #32770]

Culture medium composition

expand / minimize

[Ref.: #20938]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20938]

Culture medium growth

[Ref.: #20938]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20938]

Culture medium composition

expand / minimize

[Ref.: #119601]

Culture medium

CIP Medium 72

[Ref.: #119601]

Culture medium growth

[Ref.: #119601]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #20938]			growth	28 °C
[Ref.: #32770]			growth	30 °C

[Ref.: #20938]	Temperature range	mesophilic
[Ref.: #32770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20938]	Sample type/isolated from	geocarposphere (soil around the pod) of very immature peanuts (Arachis hypogaea)
[Ref.: #20938]	Host species	Arachis hypogaea
[Ref.: #20938]	Geographic location (country and/or sea, region)	Alabama, Henry county, Headland, Wiregrass Research and Extension Center
[Ref.: #20938]	Country	USA
[Ref.: #20938]	Country ISO 3 Code	USA
[Ref.: #20938]	Continent	North America

[Ref.: #119601]	Sample type/isolated from	Environment, Soil sample
[Ref.: #119601]	Country	United States of America
[Ref.: #119601]	Country ISO 3 Code	USA
[Ref.: #119601]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20938]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119601]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20938]	Chryseobacterium geocarposphaerae partial 16S rRNA gene, type strain 91A-561T	HG738132	1441	ENA	1416776 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium geocarposphaerae DSM 27617	GCA_002797535	contig	GenBank	1416776 tax ID	*
[Ref.: #66792]	Chryseobacterium geocarposphaerae strain DSM 27617	1416776.4	wgs	PATRIC	1416776 tax ID	*
[Ref.: #66792]	Chryseobacterium geocarposphaerae DSM 27617	2734482070	draft	JGI IMG/M	1416776 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium geocarposphaerae strain DSM 27617 PATRIC: 1416776.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium geocarposphaerae strain DSM 27617 PATRIC: 1416776.4
[Ref.: #69480]	motile	no	88.93	no
[Ref.: #69480]	gram-positive	no	97.977	no
[Ref.: #69480]	anaerobic	no	99.47	no
[Ref.: #69480]	halophile	no	95.895	no
[Ref.: #69480]	spore-forming	no	94.394	no
[Ref.: #69480]	glucose-util	yes	86.285	no
[Ref.: #69480]	thermophile	no	99.567	no
[Ref.: #69480]	aerobic	yes	90.378	no
[Ref.: #69480]	flagellated	no	95.652	no
[Ref.: #69480]	glucose-ferment	no	91.066	no

Availability in culture collections External links

[Ref.: #20938]

Culture collection no.

DSM 27617, CCM 8488, LMG 27811, CIP 110644

[Ref.: #88016]

SI-ID 390473

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium zeae sp. nov., Chryseobacterium arachidis sp. nov., and Chryseobacterium geocarposphaerae sp. nov. isolated from the rhizosphere environment.	Kampfer P, McInroy JA, Glaeser SP	Antonie Van Leeuwenhoek	10.1007/s10482-013-0101-4	2013	*
Phylogeny	Chryseobacterium cheonjiense sp. nov., isolated from forest soil.	Chaudhary DK, Dahal RH, Kim DU, Kim J	Arch Microbiol	10.1007/s00203-020-02065-w	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20938

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27617

#32770 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88016

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390473.1 )

#119601 Collection of Institut Pasteur ; Curators of the CIP; CIP 110644
* These data were automatically processed and therefore are not curated

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Chryseobacterium geocarposphaerae strain DSM 27617

Chryseobacterium geocarposphaerae strain DSM 27617

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