Strain identifier

BacDive ID: 24043

Type strain: Yes

Species: Chryseobacterium geocarposphaerae

Strain Designation: 91A-561

Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 91A-561

NCBI tax ID(s): 1416776 (species)

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General

@ref: 20938

BacDive-ID: 24043

DSM-Number: 27617

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Chryseobacterium geocarposphaerae 91A-561 is a mesophilic bacterium that was isolated from geocarposphere of very immature peanuts .

NCBI tax id

  • NCBI tax id: 1416776
  • Matching level: species

strain history

@refhistory
20938<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 91A-561 <- J. Mcinroy
119601CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 91A-561

doi: 10.13145/bacdive24043.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium geocarposphaerae
  • full scientific name: Chryseobacterium geocarposphaerae Kämpfer et al. 2014

@ref: 20938

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium geocarposphaerae

full scientific name: Chryseobacterium geocarposphaerae Kämpfer et al. 2014

strain designation: 91A-561

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no90.227
6948099.996negative
119601nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32770MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20938CASO AGAR (MERCK 105458) (DSMZ Medium 220)yesName: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/220
119601CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
20938positivegrowth28mesophilic
32770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.996

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
20938geocarposphere (soil around the pod) of very immature peanuts (Arachis hypogaea)Arachis hypogaeaAlabama, Henry county, Headland, Wiregrass Research and Extension CenterUSAUSANorth America
119601Environment, Soil sampleUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
209381Risk group (German classification)
1196011Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20938
  • description: Chryseobacterium geocarposphaerae partial 16S rRNA gene, type strain 91A-561T
  • accession: HG738132
  • length: 1441
  • database: ena
  • NCBI tax ID: 1416776

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium geocarposphaerae DSM 27617GCA_002797535contigncbi1416776
66792Chryseobacterium geocarposphaerae strain DSM 276171416776.4wgspatric1416776
66792Chryseobacterium geocarposphaerae DSM 276172734482070draftimg1416776

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno88.93no
gram-positiveno97.977no
anaerobicno99.47no
halophileno95.895no
spore-formingno94.394no
glucose-utilyes86.285no
thermophileno99.567no
aerobicyes90.378no
flagellatedno95.652no
glucose-fermentno91.066no

External links

@ref: 20938

culture collection no.: DSM 27617, CCM 8488, LMG 27811, CIP 110644

straininfo link

  • @ref: 88016
  • straininfo: 390473

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24379020Chryseobacterium zeae sp. nov., Chryseobacterium arachidis sp. nov., and Chryseobacterium geocarposphaerae sp. nov. isolated from the rhizosphere environment.Kampfer P, McInroy JA, Glaeser SPAntonie Van Leeuwenhoek10.1007/s10482-013-0101-42013Bacteriophage Typing, Chryseobacterium/*classification/genetics/isolation & purification/metabolism, Cluster Analysis, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, *Soil MicrobiologyMetabolism
Phylogeny33047174Chryseobacterium cheonjiense sp. nov., isolated from forest soil.Chaudhary DK, Dahal RH, Kim DU, Kim JArch Microbiol10.1007/s00203-020-02065-w2020Base Composition, Chryseobacterium/*classification/genetics, Forests, Nucleic Acid Hybridization, Phosphatidylethanolamines, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Species Specificity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20938Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27617Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27617)
32770Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30448
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88016Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID390473.1
119601Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110644Collection of Institut Pasteur (CIP 110644)