Name: Chlorobaculum parvum DSM 263
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2397

Type strain:

Species: Chlorobaculum parvum

Culture col. no.: DSM 263

Strain history: <- J. Lascelles, deposited as (Chlorobium vibrioforme f. thiosulfatophilum)

NCBI tax ID(s): 274539 (species)

Special Collections

Section

Chlorobaculum parvum DSM 263 is an anaerobe, phototroph, rod-shaped bacterium of the family Chlorobiaceae.

rod-shaped
anaerobe
phototroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chlorobiota*
	Class	*Chlorobiia*
	Order	*Chlorobiales*
	Family	*Chlorobiaceae*
	Genus	*Chlorobaculum*
	Species	"Chlorobaculum parvum"
	Full Scientific Name (LPSN)	Chlorobaculum parvum Imhoff 2003

Information on morphological and physiological properties Morphology

[Ref.: #23074]	Cell width	0.7-1.1 µm

[Ref.: #23074]	Cell shape	rod-shaped
[Ref.: #23074]	Cell shape	vibrio-shaped

[Ref.: #23074]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #95]

Culture medium

PFENNIG'S MEDIUM II WITH SALT (DSMZ Medium 40)

[Ref.: #95]

Culture medium growth

[Ref.: #95]

Culture medium link

Medium recipe at MediaDive

[Ref.: #95]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #95]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #95]	Oxygen tolerance	anaerobe
[Ref.: #23074]	Oxygen tolerance	obligate anaerobe

[Ref.: #23074]

Nutrition type

phototroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23074]		NaCl	no	growth	<1.0	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23074]		cobalamin ChEBI	+	growth

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #95]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23074]	Chlorobaculum parvum 16S rRNA gene, type strain DSM 263T	Y10647	1465	GenBank ENA	274539 tax ID
[Ref.: #20218]	Chlorobaculum parvum partial 16S rRNA-23S rRNA ITS, allele 1, strain DSM 263	AM049275	487	GenBank ENA	274539 tax ID	*
[Ref.: #20218]	Chlorobaculum parvum partial 16S rRNA-23S rRNA ITS, allele 2, strain DSM 263	AM049276	509	GenBank ENA	274539 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chlorobaculum parvum DSM 263	642555120	complete	JGI IMG/M	517417 tax ID	*

[Ref.: #23074]	GC-content	56.1-56.6 mol%	Buoyant density centrifugation (BD)
[Ref.: #95]	GC-content	56.6 mol%

Availability in culture collections External links

[Ref.: #95]

Culture collection no.

DSM 263

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Stable sulfur isotope fractionation by the green bacterium Chlorobaculum parvum during photolithoautotrophic growth on sulfide.	Kelly DP	Pol J Microbiol		2008	*

References

#95	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 263

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23074

Johannes F. Imhoff: Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences. IJSEM 53: 941 - 951 2003 ( DOI 10.1099/ijs.0.02403-0 , PubMed 12892110 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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