Strain identifier
BacDive ID: 2397
Type strain: 
Species: Chlorobaculum parvum
Strain history: <- J. Lascelles, deposited as (Chlorobium vibrioforme f. thiosulfatophilum)
NCBI tax ID(s): 274539 (species)
version 8.1 (current version)
General
@ref: 95
BacDive-ID: 2397
DSM-Number: 263
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, phototroph, mesophilic, rod-shaped
description: Chlorobaculum parvum DSM 263 is an anaerobe, phototroph, mesophilic bacterium of the family Chlorobiaceae.
NCBI tax id
- NCBI tax id: 274539
- Matching level: species
strain history
- @ref: 95
- history: <- J. Lascelles, deposited as (Chlorobium vibrioforme f. thiosulfatophilum)
doi: 10.13145/bacdive2397.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlorobiota
- domain: Bacteria
- phylum: Chlorobiota
- class: Chlorobiia
- order: Chlorobiales
- family: Chlorobiaceae
- genus: Chlorobaculum
- species: Chlorobaculum parvum
- full scientific name: Chlorobaculum parvum Imhoff 2003
@ref: 95
domain: Bacteria
phylum: Chlorobi
class: Chlorobia
order: Chlorobiales
family: Chlorobiaceae
genus: Chlorobaculum
species: Chlorobaculum parvum
full scientific name: Chlorobaculum parvum Imhoff 2003
type strain: yes
Morphology
cell morphology
| @ref | cell width | cell shape | motility |
|---|---|---|---|
| 23074 | 0.7-1.1 µm | rod-shaped | no |
| 23074 | vibrio-shaped |
Culture and growth conditions
culture medium
- @ref: 95
- name: PFENNIG'S MEDIUM II WITH SALT (DSMZ Medium 40)
- growth: yes
- link: https://mediadive.dsmz.de/medium/40
- composition: Name: PFENNIG'S MEDIUM II WITH SALT (DSMZ Medium 40) Composition: NaCl 10.0 g/l NaHCO3 1.5 g/l MgSO4 x 7 H2O 0.52 g/l KCl 0.364 g/l KH2PO4 0.364 g/l Ammonium chloride 0.364 g/l Dextrose 0.26 g/l Ammonium acetate 0.26 g/l Pyruvic acid sodium salt 0.26 g/l Yeast extract 0.25 g/l CaCl2 x 2 H2O 0.25 g/l Resazurin 0.00225 g/l HCl 0.002002 g/l FeSO4 x 7 H2O 0.00156 g/l Vitamin B12 0.001 g/l H3BO3 0.000312 g/l CoCl2 x 6 H2O 0.0001976 g/l MnCl2 x 4 H2O 0.000104 g/l ZnCl2 7.28e-05 g/l Na2MoO4 x 2 H2O 3.744e-05 g/l NiCl2 x 6 H2O 2.496e-05 g/l CuCl2 x 2 H2O 2.08e-06 g/l Distilled water
culture temp
- @ref: 95
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 95 | anaerobe |
| 23074 | obligate anaerobe |
nutrition type
- @ref: 23074
- type: phototroph
halophily
- @ref: 23074
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: <1.0 %
metabolite utilization
- @ref: 23074
- Chebi-ID: 30411
- metabolite: cobalamin
- utilization activity: +
- kind of utilization tested: growth
Safety information
risk assessment
- @ref: 95
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Chlorobaculum parvum partial 16S rRNA-23S rRNA ITS, allele 1, strain DSM 263 | AM049275 | 487 | ena | 274539 |
| 20218 | Chlorobaculum parvum partial 16S rRNA-23S rRNA ITS, allele 2, strain DSM 263 | AM049276 | 509 | ena | 274539 |
| 23074 | Chlorobaculum parvum 16S rRNA gene, type strain DSM 263T | Y10647 | 1465 | nuccore | 274539 |
Genome sequences
- @ref: 66792
- description: Chlorobaculum parvum DSM 263
- accession: 642555120
- assembly level: complete
- database: img
- NCBI tax ID: 517417
GC content
| @ref | GC-content | method |
|---|---|---|
| 23074 | 56.1-56.6 | Buoyant density centrifugation (BD) |
| 95 | 56.6 |
External links
@ref: 95
culture collection no.: DSM 263
literature
- topic: Metabolism
- Pubmed-ID: 19275040
- title: Stable sulfur isotope fractionation by the green bacterium Chlorobaculum parvum during photolithoautotrophic growth on sulfide.
- authors: Kelly DP
- journal: Pol J Microbiol
- year: 2008
- mesh: Autotrophic Processes/physiology, Chlorobium/growth & development/*metabolism, Oxidation-Reduction, Phototrophic Processes/physiology, Sulfates/analysis, Sulfides/analysis/*metabolism, Sulfur/analysis/*metabolism, Sulfur Isotopes/analysis/*metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 95 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 263) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-263 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 23074 | Johannes F. Imhoff | 10.1099/ijs.0.02403-0 | Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences | IJSEM 53: 941-951 2003 | 12892110 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |