Name: Chlorobaculum limnaeum 4930
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2396

Type strain:

Species: Chlorobaculum limnaeum

Strain Designation: 4930

Culture col. no.: DSM 1677

Strain history: <- H. Biebl, 4930

NCBI tax ID(s): 274537 (species)

Special Collections

Section

Chlorobaculum limnaeum 4930 is an anaerobe, phototroph, rod-shaped bacterium of the family Chlorobiaceae.

rod-shaped
anaerobe
phototroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chlorobiota*
	Class	*Chlorobiia*
	Order	*Chlorobiales*
	Family	*Chlorobiaceae*
	Genus	*Chlorobaculum*
	Species	"Chlorobaculum limnaeum"
	Full Scientific Name (LPSN)	Chlorobaculum limnaeum Imhoff 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %94

[Ref.: #23074]	Cell width	0.6-0.8 µm

[Ref.: #23074]	Cell shape	rod-shaped

[Ref.: #23074]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #854]

Culture medium

PFENNIG'S MEDIUM II (modified 1988, for green sulfur bacteria) (DSMZ Medium 29)

[Ref.: #854]

Culture medium growth

[Ref.: #854]

Culture medium link

Medium recipe at MediaDive

[Ref.: #854]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #854]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #854]	Oxygen tolerance	anaerobe
[Ref.: #23074]	Oxygen tolerance	obligate anaerobe

[Ref.: #23074]

Nutrition type

phototroph

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23074]		cobalamin ChEBI	+	growth
[Ref.: #23074]		sodium chloride ChEBI	+	growth

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #854]	Geographic location (country and/or sea, region)	Lake Kinnevet
[Ref.: #854]	Country	Israel
[Ref.: #854]	Country ISO 3 Code	ISR
[Ref.: #854]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HE582773 (>99% sequence identity) for Chlorobaculum limnaeum from Microbeatlas

Aquatic Samples	92
Soil Samples	20
Animal Samples	1
Plant Samples
Total Samples	113

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #854]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23074]	Chlorobaculum limnaeum partial 16S rRNA gene, type strain DSM 1677T	AJ290831	1241	GenBank ENA	274537 tax ID
[Ref.: #20218]	Chlorobaculum limnaeum partial 16S rRNA gene, type strain DSM 1677T	HE582773	1492	GenBank ENA	274537 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chlorobaculum limnaeum DSM 1677	GCA_001747405	complete	GenBank ENA	274537 tax ID	*
[Ref.: #66792]	Chlorobaculum limnaeum strain DSM 1677	274537.5	complete	PATRIC	274537 tax ID	*
[Ref.: #66792]	Chlorobaculum limnaeum DSM 1677	2501846309	draft	JGI IMG/M	274537 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chlorobaculum limnaeum DSM 1677 NCBI: GCA_001747405.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chlorobaculum limnaeum DSM 1677 NCBI: GCA_001747405.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	73.454	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	82.694	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.648	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	82.876	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	75.208	no

Availability in culture collections External links

[Ref.: #854]

Culture collection no.

DSM 1677

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Photoautotrophic and Bacteriochlorophyll e-Synthesizing Green Sulfur Bacterium Chlorobaculum limnaeum DSM 1677(T).	Tank M, Liu Z, Frigaard NU, Tomsho LP, Schuster SC, Bryant DA	Genome Announc	10.1128/genomeA.00529-17	2017	*

References

#854	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1677

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23074

Johannes F. Imhoff: Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences. IJSEM 53: 941 - 951 2003 ( DOI 10.1099/ijs.0.02403-0 , PubMed 12892110 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Chlorobaculum limnaeum DSM 1677

Chlorobaculum limnaeum DSM 1677

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