Name: Rhodoferax antarcticus Ant.Br
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23871

Type strain:

Species: Rhodoferax antarcticus

Strain Designation: Ant.Br

Culture col. no.: DSM 24876, ATCC 700587

Strain history: <- M. Madigan, Department of Microbiology, University of Illinois; Ant.Br

NCBI tax ID(s): 81479 (species)

SI-ID 44024

ATCC 700587

Special Collections

DSMZ

Section

Rhodoferax antarcticus Ant.Br is an anaerobe, Gram-negative bacterium that was isolated from algal-bacterial mat.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Rhodoferax*
	Species	**Rhodoferax antarcticus**
	Full Scientific Name (LPSN)	Rhodoferax antarcticus Madigan et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.494

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20764]

Culture medium

RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)

[Ref.: #20764]

Culture medium growth

[Ref.: #20764]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20764]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20764]			growth	20 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20764]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.108
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20764]	Sample type/isolated from	algal-bacterial mat
[Ref.: #20764]	Geographic location (country and/or sea, region)	Ross Island (77-78 °S), ponds in and around Cape Royds
[Ref.: #20764]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Microbial community	#Microbial mat
#Host	#Algae	-
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU233447 (>99% sequence identity) for Rhodoferax antarcticus subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	19
Animal Samples	2
Plant Samples	6
Total Samples	85

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20764]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20764]	Rhodoferax antarcticus small subunit ribosomal RNA gene, complete sequence	AF084947	1484	GenBank ENA	1111071 tax ID
[Ref.: #20764]	Rhodoferax antarcticus strain ANT.BR 16S ribosomal RNA gene, partial sequence	GU233447	1458	GenBank ENA	1111071 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodoferax antarcticus DSMZ24876	GCA_001955735	complete	GenBank ENA	81479 tax ID	*
[Ref.: #66792]	Rhodoferax antarcticus ANT.BR	GCA_001938565	contig	GenBank ENA	1111071 tax ID	*
[Ref.: #66792]	Rhodoferax antarcticus ANT.BR	1111071.4	wgs	PATRIC	1111071 tax ID	*
[Ref.: #66792]	Rhodoferax antarcticus strain DSM 24876	81479.8	complete	PATRIC	81479 tax ID	*
[Ref.: #66792]	Rhodoferax antarcticus strain DSM 24876 strain DSMZ24876	81479.11	plasmid	PATRIC	81479 tax ID	*
[Ref.: #66792]	Rhodoferax antarcticus strain DSM 24876 strain DSMZ24876	81479.10	plasmid	PATRIC	81479 tax ID	*

[Ref.: #20764]

GC-content

61.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodoferax antarcticus DSM 24876 NCBI: GCA_001955735.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodoferax antarcticus DSM 24876 NCBI: GCA_001955735.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.494	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	56.446	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	50.429	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.108	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.359	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.754	no

Availability in culture collections External links

[Ref.: #20764]

Culture collection no.

DSM 24876, ATCC 700587

[Ref.: #87883]

SI-ID 44024

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodoferax koreense sp. nov, an obligately aerobic bacterium within the family Comamonadaceae, and emended description of the genus Rhodoferax.	Farh ME, Kim YJ, Singh P, Jung SY, Kang JP, Yang DC	J Microbiol	10.1007/s12275-017-7033-z	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20764

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24876

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87883

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44024.1 )

* These data were automatically processed and therefore are not curated

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Rhodoferax antarcticus DSM 24876

Rhodoferax antarcticus DSM 24876

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