Name: Ramlibacter ginsenosidimutans BXN5-27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23870

Type strain:

Species: Ramlibacter ginsenosidimutans

Strain Designation: BXN5-27

Culture col. no.: DSM 23480, DSM 21137, KCTC 22276, LMG 24525

Strain history: <- S.-T. Lee et al., College of Bio & Food Technology, Dalian Polytechnic University, P.R. China

NCBI tax ID(s): 502333 (species)

SI-ID 391108

LMG 24525, DSM 23480, KCTC 22276, KACC 17527

Section

Ramlibacter ginsenosidimutans BXN5-27 is a mesophilic bacterium that was isolated from soil of a ginseng field.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Ramlibacter*
	Species	**Ramlibacter ginsenosidimutans**
	Full Scientific Name (LPSN)	Ramlibacter ginsenosidimutans Wang et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20759]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20759]

Culture medium growth

[Ref.: #20759]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20759]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20759]			growth	28 °C

[Ref.: #20759]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20759]	Sample type/isolated from	soil of a ginseng field
[Ref.: #20759]	Geographic location (country and/or sea, region)	Baekdu Mountain
[Ref.: #20759]	Country	China
[Ref.: #20759]	Country ISO 3 Code	CHN
[Ref.: #20759]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU423304 (>99% sequence identity) for Ramlibacter ginsenosidimutans subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	20
Animal Samples	2
Plant Samples	11
Total Samples	38

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20759]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20759]	Ramlibacter ginsenosidimutans strain BXN5-27 16S ribosomal RNA gene, partial sequence	EU423304	1465	ENA	502333 tax ID

[Ref.: #20759]

GC-content

68.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20759]

Culture collection no.

DSM 23480, DSM 21137, KCTC 22276, LMG 24525

[Ref.: #87882]

SI-ID 391108

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ramlibacter monticola sp. nov., isolated from forest soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002314	2017	*
Phylogeny	Ramlibacter alkalitolerans sp. nov., alkali-tolerant bacterium isolated from soil of ginseng.	Lee DH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002342	2017	*
Phylogeny	Ramlibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity.	Wang L, An DS, Kim SG, Jin FX, Kim SC, Lee ST, Im WT	J Microbiol Biotechnol	10.4014/jmb.1106.06041	2012	*
Phylogeny	Genome mining revealed polyhydroxybutyrate biosynthesis by Ramlibacter agri sp. nov., isolated from agriculture soil in Korea.	Dahal RH, Kim J, Chaudhary DK, Le TTN, Kim DU, Jang H, Kim J	Antonie Van Leeuwenhoek	10.1007/s10482-022-01721-z	2022	*
Phylogeny	Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil.	Khan SA, Kim HM, Baek JH, Jung HS, Jeon CO	J Microbiol Biotechnol	10.4014/jmb.2105.05023	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20759

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23480

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87882

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391108.1 )

* These data were automatically processed and therefore are not curated

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