Oceanirhabdus sediminicola (DSM 26274, CCTCC AB 2013103, JCM 18501)

Name: Oceanirhabdus sediminicola (DSM 26274, CCTCC AB 2013103, JCM 18501)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23862

Type strain

Strain Designation NH-JN4

Culture col. no. DSM 26274 CCTCC AB 2013103 JCM 18501 KCTC 15322 NH-JN4

NCBI tax ID(s) 1176697

Special Collections DSMZ JCM KCTC Literature strains

Links

Oceanirhabdus sediminicola NH-JN4 is an anaerobe, spore-forming, mesophilic prokaryote that was isolated from sea sediment.

spore-forming Gram-positive rod-shaped anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 405826

KCTC 15322,JCM 18501,DSM 26274

@ref 20215

Last LPSN update 2025-12-16 09:52:45

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Oceanirhabdus

Species Oceanirhabdus sediminicola

Full scientific name Oceanirhabdus sediminicola Pi et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31069	positive	4.6 µm	0.85 µm	rod-shaped
67771				rod-shaped
67771	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21287	OCEANIRHABDUS MEDIUM (DSMZ Medium 1515)		Medium recipe at MediaDive	Name: OCEANIRHABDUS MEDIUM (DSMZ Medium 1515) Composition: NaCl 30.0 g/l Na-acetate 6.8 g/l MgCl2 x 6 H2O 5.0 g/l Tryptone 4.0 g/l Yeast extract 3.0 g/l NaHCO3 2.5 g/l Na2SO4 1.0 g/l CaCl2 x 2 H2O 1.0 g/l KCl 0.7 g/l L-Cysteine HCl x H2O 0.6 g/l NH4Cl 0.5 g/l K2HPO4 0.4 g/l KH2PO4 0.4 g/l HCl 0.0025 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.002 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21287	positive	growth	35	mesophilic
31069	positive	growth	22-42
31069	positive	optimum	36	mesophilic
67770	positive	growth	35	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH
31069	positive	optimum	6.75
31069	positive	growth	6.0-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
21287	anaerobe
31069	anaerobe
67771	anaerobe

Spore formation

@ref	Spore formation
31069
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31069	NaCl	positive	growth	0.5-6 %
31069	NaCl	positive	optimum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31069	15428 ChEBI	glycine	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21287	sea sediment	South China Sea	Taiwan, Province of China	TWN	Asia	22.5833	119.117 22.5833/119.117
67770	Sediment of South China Sea
67771	From sediment	south China Sea	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ771468 (>99% sequence identity) for Oceanirhabdus sediminicola subclade from Microbeatlas

Aquatic Samples	4447
Soil Samples	295
Animal Samples	736
Plant Samples	52
Total Samples	5530

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21287	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21287	Oceanirhabdus sediminicola strain NH-JN4 16S ribosomal RNA gene, partial sequence	JQ771468	1473		1176697

GC content

@ref	GC-content (mol%)	Method
21287	35.8	high performance liquid chromatography (HPLC)
31069	35.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloimpatiens lingqiaonensis gen. nov., sp. nov., an anaerobic bacterium isolated from paper-mill wastewater.	Wu D, Zhang NF, Sun C, Zhang WW, Han SB, Pan J, Wu M, Th D, Zhu XF	Int J Syst Evol Microbiol	10.1099/ijsem.0.000765	2015
Phylogeny	Oceanirhabdus sediminicola gen. nov., sp. nov., an anaerobic bacterium isolated from sea sediment.	Pi RX, Zhang WW, Fang MX, Zhang YZ, Li TT, Wu M, Zhu XF	Int J Syst Evol Microbiol	10.1099/ijs.0.051243-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21287	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26274
#31069	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27398 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oceanirhabdus sediminicola (DSM 26274, CCTCC AB 2013103, JCM 18501)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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