Name: Youngiibacter fragilis 232.1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23863

Type strain:

Species: Youngiibacter fragilis

Strain Designation: 232.1

Culture col. no.: DSM 24749, ATCC BAA-2257

Strain history: <- T. Allen, Dept. Botany and Microbiol., Univ. Oklahoma, USA; strain 232.1 <- B. Wawrik {2010}

NCBI tax ID(s): 1408819 (species)

SI-ID 405930

DSM 24749

Section

Youngiibacter fragilis 232.1 is an anaerobe, mesophilic bacterium that was isolated from natural gas production water.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Youngiibacter*
	Species	**Youngiibacter fragilis**
	Full Scientific Name (LPSN)	Youngiibacter fragilis Lawson et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21300]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #21300]

Culture medium growth

[Ref.: #21300]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21300]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21300]			growth	30 °C

[Ref.: #21300]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21300]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21300]	Sample type/isolated from	natural gas production water
[Ref.: #21300]	Geographic location (country and/or sea, region)	Alaska, Cook Inlet, Beluga River field
[Ref.: #21300]	Country	USA
[Ref.: #21300]	Country ISO 3 Code	USA
[Ref.: #21300]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	-	-
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF262039 (>99% sequence identity) for Youngiibacter fragilis from Microbeatlas

Aquatic Samples	52
Soil Samples	23
Animal Samples	17
Plant Samples	5
Total Samples	97

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21300]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21300]	Youngiibacter fragilis 232.1 16S ribosomal RNA gene, partial sequence	JF262039	1442	ENA	994573 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Youngiibacter fragilis 232.1	GCA_000495435	scaffold	GenBank	994573 tax ID	*
[Ref.: #66792]	Youngiibacter fragilis 232.1	2582580929	draft	JGI IMG/M	994573 tax ID	*

[Ref.: #21300]

GC-content

45.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Youngiibacter fragilis 232.1 232.1 NCBI: GCA_000495435.2
[Ref.: #69480]	motile	no	86.808	no
[Ref.: #69480]	flagellated	no	91.39	no
[Ref.: #69480]	gram-positive	yes	79.196	no
[Ref.: #69480]	anaerobic	yes	98.413	yes
[Ref.: #69480]	aerobic	no	97.767	yes
[Ref.: #69480]	halophile	no	82.338	no
[Ref.: #69480]	spore-forming	no	65.963	no
[Ref.: #69480]	thermophile	no	87.926	yes
[Ref.: #69480]	glucose-util	yes	87.892	no
[Ref.: #69480]	glucose-ferment	yes	61.082	no
[Ref.: #69480]	motile	no	86.808	no
[Ref.: #69480]	flagellated	no	91.39	no
[Ref.: #69480]	gram-positive	yes	79.196	no
[Ref.: #69480]	anaerobic	yes	98.413	yes
[Ref.: #69480]	aerobic	no	97.767	yes
[Ref.: #69480]	halophile	no	82.338	no
[Ref.: #69480]	spore-forming	no	65.963	no
[Ref.: #69480]	thermophile	no	87.926	yes
[Ref.: #69480]	glucose-util	yes	87.892	no
[Ref.: #69480]	glucose-ferment	yes	61.082	no

Availability in culture collections External links

[Ref.: #21300]

Culture collection no.

DSM 24749, ATCC BAA-2257

[Ref.: #87876]

SI-ID 405930

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteiniclasticum aestuarii sp. nov., isolated from tidal flat sediment, and emended descriptions of the genus Proteiniclasticum and Proteiniclasticum ruminis.	Namirimu T, Yang JA, Yang SH, Yu J, Kim YJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijsem.0.005275	2022	*
Phylogeny	Youngiibacter fragilis gen. nov., sp. nov., isolated from natural gas production-water and reclassification of Acetivibrio multivorans as Youngiibacter multivorans comb. nov.	Lawson PA, Wawrik B, Allen TD, Johnson CN, Marks CR, Tanner RS, Harriman BH, Strapoc D, Callaghan AV	Int J Syst Evol Microbiol	10.1099/ijs.0.053728-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21300

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24749

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87876

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405930.1 )

* These data were automatically processed and therefore are not curated

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Youngiibacter fragilis 232.1 232.1

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