Actinotalea fermentans M is a facultative anaerobe, Gram-positive, rod-shaped bacterium that was isolated from municipal dumping ground.
Gram-positive rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Cellulomonadaceae |
| Genus Actinotalea |
| Species Actinotalea fermentans |
| Full scientific name Actinotalea fermentans (Bagnara et al. 1985) Yi et al. 2007 |
| Synonyms (1) |
| BacDive ID | Other strains from Actinotalea fermentans (1) | Type strain |
|---|---|---|
| 137200 | A. fermentans CIP 52.12 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18460 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18460 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 1308 | CELLULOMONAS FERMENTANS MEDIUM (DSMZ Medium 350) | Medium recipe at MediaDive | Name: CELLULOMONAS FERMENTANS MEDIUM (DSMZ Medium 350) Composition: Cellulose 5.0 g/l Cellobiose 5.0 g/l Yeast extract 5.0 g/l K2HPO4 2.21 g/l KH2PO4 1.5 g/l (NH4)2SO4 1.3 g/l NaHCO3 0.8 g/l L-Cysteine HCl x H2O 0.5 g/l MgCl2 x 6 H2O 0.1 g/l CaCl2 x 2 H2O 0.02 g/l FeSO4 x 7 H2O 0.00125 g/l Resazurin 0.001 g/l Distilled water | ||
| 37986 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 1308 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | Medium recipe at MediaDive | Name: PYG MEDIUM (modified) (DSMZ Medium 104; with strain-specific modifications) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l Cellobiose 3.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Tween 80 Distilled water | ||
| 119307 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 18460 | NaCl | positive | maximum | 2.5 % |
| 67770 | Observationquinones: MK-10(H4) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 18460 | 22599 ChEBI | arabinose | - | ||
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 18460 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 119307 | 4853 ChEBI | esculin | + | hydrolysis | |
| 18460 | 28757 ChEBI | fructose | - | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 18460 | 17234 ChEBI | glucose | - | ||
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68379 | 17716 ChEBI | lactose | + | fermentation | from API Coryne |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 18460 | 29864 ChEBI | mannitol | - | ||
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 18460 | 17268 ChEBI | myo-inositol | - | ||
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 119307 | 17632 ChEBI | nitrate | + | reduction | |
| 119307 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 18460 | 16634 ChEBI | raffinose | - | ||
| 18460 | 26546 ChEBI | rhamnose | - | ||
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 18460 | 17992 ChEBI | sucrose | - | ||
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 18460 | 18222 ChEBI | xylose | - |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 119307 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 119307 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 119307 | amylase | + | ||
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | + | 3.2.1.31 | from API Coryne |
| 119307 | caseinase | - | 3.4.21.50 | |
| 119307 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68379 | gelatinase | - | from API Coryne | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 119307 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 119307 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 119307 | oxidase | - | ||
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119307 | urease | - | 3.5.1.5 | |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119307 | not determinedn.d. | - | - | - | + | - | + | - | - | - | + | + | + | + | - | - | - | - | + | + | - | - | - | - | - | +/- | +/- | + | + | +/- | - | + | + | - | - | +/- | + | + | - | + | + | +/- | - | - | - | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM799147v1 assembly for Actinotalea fermentans NBRC 105374 | contig | 43671 | 71.53 | ||||
| 67770 | ASM76721v1 assembly for Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 | contig | 862422 | 0 | ||||
| 67770 | ASM131396v1 assembly for Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 | contig | 862422 | 0 | ||||
| 67770 | ASM476914v1 assembly for Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 | scaffold | 862422 | 0 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Actinotalea fermentans ATCC 43279 strain DSM 3133 16S ribosomal RNA gene, partial sequence | JQ899213 | 651 | 862422 | ||
| 20218 | C.fermentans DSM 3133 16S rDNA | X79458 | 1486 | 862422 | ||
| 20218 | C.fermentans 16S rRNA gene | X83805 | 1453 | 862422 | ||
| 67770 | Actinotalea fermentans gene for 16S rRNA, partial sequence | AB639014 | 1478 | 43671 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 98.78 | no |
| 125439 | motility | BacteriaNetⓘ | no | 75.22 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 38.25 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.17 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.44 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 70.20 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 51.61 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.50 | no |
| 125438 | flagellated | motile2+ⓘ | no | 70.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Characterization of a D-lyxose isomerase from Bacillus velezensis and its application for the production of D-mannose and L-ribose. | Guo Z, Long L, Ding S. | AMB Express | 10.1186/s13568-019-0877-3 | 2019 | ||
| Metabolism | Characterization of truncated endo-beta-1,4-glucanases from a compost metagenomic library and their saccharification potentials. | Lee JP, Lee HW, Na HB, Lee JH, Hong YJ, Jeon JM, Kwon EJ, Kim SK, Kim H. | Int J Biol Macromol | 10.1016/j.ijbiomac.2018.04.102 | 2018 | |
| De novo biosynthesis of p-coumaric acid and caffeic acid from carboxymethyl-cellulose by microbial co-culture strategy. | Cai M, Liu J, Song X, Qi H, Li Y, Wu Z, Xu H, Qiao M. | Microb Cell Fact | 10.1186/s12934-022-01805-5 | 2022 | ||
| Metabolism | Synthesis of methyl halides from biomass using engineered microbes. | Bayer TS, Widmaier DM, Temme K, Mirsky EA, Santi DV, Voigt CA. | J Am Chem Soc | 10.1021/ja809461u | 2009 | |
| Metabolism | Characterization of wheat straw-degrading anaerobic alkali-tolerant mixed cultures from soda lake sediments by molecular and cultivation techniques. | Porsch K, Wirth B, Toth EM, Schattenberg F, Nikolausz M. | Microb Biotechnol | 10.1111/1751-7915.12272 | 2015 | |
| Metabolism | Succession of lignocellulolytic bacterial consortia bred anaerobically from lake sediment. | Korenblum E, Jimenez DJ, van Elsas JD. | Microb Biotechnol | 10.1111/1751-7915.12338 | 2016 | |
| Molecular Tools for Monitoring the Ecological Sustainability of a Stone Bio-Consolidation Treatment at the Royal Chapel, Granada. | Jroundi F, Gonzalez-Munoz MT, Sterflinger K, Pinar G. | PLoS One | 10.1371/journal.pone.0132465 | 2015 | ||
| Production of naringenin from D-xylose with co-culture of E. coli and S. cerevisiae. | Zhang W, Liu H, Li X, Liu D, Dong XT, Li FF, Wang EX, Li BZ, Yuan YJ. | Eng Life Sci | 10.1002/elsc.201700039 | 2017 | ||
| Understanding the Mechanisms of Positive Microbial Interactions That Benefit Lactic Acid Bacteria Co-cultures. | Canon F, Nidelet T, Guedon E, Thierry A, Gagnaire V. | Front Microbiol | 10.3389/fmicb.2020.02088 | 2020 | ||
| Metabolism | Aerobic and anaerobic cellulase production by Cellulomonas uda. | Poulsen HV, Willink FW, Ingvorsen K. | Arch Microbiol | 10.1007/s00203-016-1230-8 | 2016 | |
| Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs. | Mauri M, Gouze JL, de Jong H, Cinquemani E. | PLoS Comput Biol | 10.1371/journal.pcbi.1007795 | 2020 | ||
| Microbial Consortia Engineering for Cellular Factories: in vitro to in silico systems. | Bernstein HC, Carlson RP. | Comput Struct Biotechnol J | 10.5936/csbj.201210017 | 2012 | ||
| Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture. | Zuroff TR, Xiques SB, Curtis WR. | Biotechnol Biofuels | 10.1186/1754-6834-6-59 | 2013 | ||
| Enzymology | Characterization of an L-Arabinose Isomerase from Bacillus velezensis and Its Application for L-Ribulose and L-Ribose Biosynthesis. | Guo Z, Long L, Ding S | Appl Biochem Biotechnol | 10.1007/s12010-020-03380-0 | 2020 | |
| Metabolism | Isolation and subunit structure of the xylanosome complex produced by Actinotalea fermentans JCM9966. | Dou TY, Chen J, Liu WJ, Wang L | Biotechnol Lett | 10.1007/s10529-019-02761-8 | 2019 | |
| Metabolism | Overexpression and characterization of a recombinant l-ribose isomerase from Actinotalea fermentans ATCC 43279. | Tseng WC, Wu TJ, Chang YJ, Cheng HW, Fang TY | J Biotechnol | 10.1016/j.jbiotec.2017.07.023 | 2017 | |
| Genetics | Physiological and Genomic Characterization of Actinotalea subterranea sp. nov. from Oil-Degrading Methanogenic Enrichment and Reclassification of the Family Actinotaleaceae. | Semenova EM, Grouzdev DS, Sokolova DS, Tourova TP, Poltaraus AB, Potekhina NV, Shishina PN, Bolshakova MA, Avtukh AN, Ianutsevich EA, Tereshina VM, Nazina TN. | Microorganisms | 10.3390/microorganisms10020378 | 2022 | |
| Phylogeny | Actinotalea soli sp. nov., isolated from Kubuqi Desert soil. | Du J, Ping W, Chen Y, Pang H, Bai P, Cui S, Zhang J. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005660 | 2022 | |
| Metabolism | The genome sequences of Cellulomonas fimi and "Cellvibrio gilvus" reveal the cellulolytic strategies of two facultative anaerobes, transfer of "Cellvibrio gilvus" to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov. | Christopherson MR, Suen G, Bramhacharya S, Jewell KA, Aylward FO, Mead D, Brumm PJ. | PLoS One | 10.1371/journal.pone.0053954 | 2013 | |
| Phylogeny | Actinotalea solisilvae sp. nov., isolated from forest soil and emended description of the genus Actinotalea. | Yan ZF, Lin P, Li CT, Kook M, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002584 | 2018 | |
| Phylogeny | Actinotalea caeni sp. nov., isolated from a sludge sample of a biofilm reactor. | Jin L, Ko SR, Lee CS, Ahn CY, Lee JS, Lee KC, Oh HM, Lee HG | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001769 | 2017 | |
| Phylogeny | Pseudactinotalea terrae gen. nov., sp. nov., isolated from greenhouse soil, and reclassification of Actinotalea suaedae as Pseudactinotalea suaedae comb. nov. | Cho H, Hamada M, Ahn JH, Weon HY, Joa JH, Suzuki KI, Kwon SW, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001701 | 2017 | |
| Phylogeny | Actinotalea ferrariae sp. nov., isolated from an iron mine, and emended description of the genus Actinotalea. | Li Y, Chen F, Dong K, Wang G | Int J Syst Evol Microbiol | 10.1099/ijs.0.048512-0 | 2013 | |
| Phylogeny | Demequina aestuarii gen. nov., sp. nov., a novel actinomycete of the suborder Micrococcineae, and reclassification of Cellulomonas fermentans Bagnara et al. 1985 as Actinotalea fermentans gen. nov., comb. nov. | Yi H, Schumann P, Chun J | Int J Syst Evol Microbiol | 10.1099/ijs.0.64525-0 | 2007 |
| #1308 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3133 |
| #18460 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #37986 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #119307 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103003 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive2385.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data