Name: Cellulomonas pakistanensis DSM 24792
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23833

Type strain:

Species: Cellulomonas pakistanensis

Culture col. no.: DSM 24792, JCM 18755, KCTC 19798, NCCP 11, NBRC 110800

Strain history: <- I Ahmed, NCCP, Pakistan

NCBI tax ID(s): 992287 (species)

SI-ID 401961

DSM 24792

Other strains from Cellulomonas pakistanensis

C. pakistanensis FR1-160, DSM 30736
C. pakistanensis KO_PS45, DSM 30843

Section

Cellulomonas pakistanensis DSM 24792 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from paddy grain of stored rice seeds.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Cellulomonadaceae*
	Genus	*Cellulomonas*
	Species	**Cellulomonas pakistanensis**
	Full Scientific Name (LPSN)	Cellulomonas pakistanensis Ahmed et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20497]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #20497]

Culture medium growth

[Ref.: #20497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20497]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20497]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #20497]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.685

[Ref.: #67770]	Observation	quinones: MK-9(H₄)
[Ref.: #67771]	Observation	quinones: MK-9(H4)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20497]	Sample type/isolated from	paddy grain of stored rice seeds
[Ref.: #20497]	Geographic location (country and/or sea, region)	Islamabad, National Agricultural Research Centre, GenBank of the Plant Genetic Resources Institute (PGRI)
[Ref.: #20497]	Country	Pakistan
[Ref.: #20497]	Country ISO 3 Code	PAK
[Ref.: #20497]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Paddy seed
[Ref.: #67770]	Geographic location (country and/or sea, region)	Islamabad
[Ref.: #67770]	Country	Pakistan
[Ref.: #67770]	Country ISO 3 Code	PAK
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From rice seed stored in PGRI Gene Bank
[Ref.: #67771]	Country	Pakistan
[Ref.: #67771]	Country ISO 3 Code	PAK
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB618146 (>99% sequence identity) for Cellulomonas from Microbeatlas

Aquatic Samples	65
Soil Samples	60
Animal Samples	69
Plant Samples	26
Total Samples	220

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20497]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20497]	Cellulomonas pakistanensis gene for 16S rRNA, partial sequence	AB618146	1421	ENA	992287 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cellulomonas pakistanensis NBRC 110800	GCA_016862755	contig	GenBank	992287 tax ID	*
[Ref.: #66792]	Cellulomonas pakistanensis JCM 18755	GCA_001315505	contig	GenBank	992287 tax ID	*
[Ref.: #66792]	Cellulomonas pakistanensis strain JCM 18755	992287.3	wgs	PATRIC	992287 tax ID	*
[Ref.: #66792]	Cellulomonas pakistanensis strain NBRC 110800	992287.4	wgs	PATRIC	992287 tax ID	*
[Ref.: #66792]	Cellulomonas pakistanensis JCM 18755	2734481991	draft	JGI IMG/M	992287 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cellulomonas pakistanensis strain NBRC 110800 PATRIC: 992287.4
[Ref.: #69481]	spore-forming	yes	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cellulomonas pakistanensis strain JCM 18755 PATRIC: 992287.3
[Ref.: #69480]	motile	no	73.844	no
[Ref.: #69480]	flagellated	no	90.995	no
[Ref.: #69480]	gram-positive	yes	71.138	no
[Ref.: #69480]	anaerobic	no	96.624	yes
[Ref.: #69480]	halophile	no	85.999	no
[Ref.: #69480]	spore-forming	no	94.977	no
[Ref.: #69480]	thermophile	no	97.064	yes
[Ref.: #69480]	glucose-util	yes	88.655	no
[Ref.: #69480]	aerobic	yes	68.364	yes
[Ref.: #69480]	glucose-ferment	yes	71.069	no

Availability in culture collections External links

[Ref.: #20497]

Culture collection no.

DSM 24792, JCM 18755, KCTC 19798, NCCP 11, NBRC 110800

[Ref.: #87858]

SI-ID 401961

Literature:

	Title	Authors	Journal	DOI	Year
Stress	Morphological and elemental evaluation of biochar through analytical techniques and its combined effect along with plant growth promoting rhizobacteria on Vicia faba L. under induced drought stress.	Nafees M, Ullah S, Ahmed I	Microsc Res Tech	10.1002/jemt.23854	2021	*
Phylogeny	Cellulomonas pakistanensis sp. nov., a moderately halotolerant Actinobacteria.	Ahmed I, Kudo T, Abbas S, Ehsan M, Iino T, Fujiwara T, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.059063-0	2014	*
Phylogeny	Cellulomonas triticagri sp. nov., isolated from the rhizosphere soil of wheat (Triticum aestivum L.).	Han C, Zhang Y, Yu B, Shan Q, Zhao J, Shi H, Tian Y, Zhang Y, Zhu C, Xiang W	Arch Microbiol	10.1007/s00203-022-03036-z	2022	*
	Modulation of drought adversities in Vicia faba by the application of plant growth promoting rhizobacteria and biochar.	Nafees M, Ullah S, Ahmed I	Microsc Res Tech	10.1002/jemt.24047	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20497

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24792

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87858

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401961.1 )

* These data were automatically processed and therefore are not curated

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Cellulomonas pakistanensis strain NBRC 110800

Cellulomonas pakistanensis strain JCM 18755

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