Name: Cellulomonas marina FXJ8.089
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23832

Type strain:

Species: Cellulomonas marina

Strain Designation: FXJ8.089

Culture col. no.: DSM 24960, CGMCC 4.6945, NBRC 110784, JCM 30777

Strain history: CGMCC 4.6945 <-- Y. Huang; Inst of Microbiol., CAS, China; FXJ8.089.

NCBI tax ID(s): 988821 (species)

SI-ID 405346

DSM 24960

Section

Cellulomonas marina FXJ8.089 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from deep-sea water.

coccus-shaped
Gram-positive
motile
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Cellulomonadaceae*
	Genus	*Cellulomonas*
	Species	**Cellulomonas marina**
	Full Scientific Name (LPSN)	Cellulomonas marina Zhang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30980]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30980]	Cell shape	coccus-shaped

[Ref.: #30980]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20496]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #20496]

Culture medium growth

[Ref.: #20496]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20496]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20496]	growth	28 °C
[Ref.: #30980]	growth	04-37 °C
[Ref.: #30980]	optimum	26.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #20496]	Temperature range	mesophilic
[Ref.: #30980]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30980]			optimum	7.5
[Ref.: #30980]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30980]

Oxygen tolerance

facultative anaerobe

[Ref.: #30980]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.85

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30980]		NaCl		growth	0-3	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30980]	cellobiose ChEBI	+	carbon source
[Ref.: #30980]	galactose ChEBI	+	carbon source
[Ref.: #30980]	glucose ChEBI	+	carbon source
[Ref.: #30980]	glycerol ChEBI	+	carbon source
[Ref.: #30980]	lactose ChEBI	+	carbon source
[Ref.: #30980]	mannose ChEBI	+	carbon source
[Ref.: #30980]	nitrate ChEBI	+	reduction
[Ref.: #30980]	rhamnose ChEBI	+	carbon source
[Ref.: #30980]	ribose ChEBI	+	carbon source
[Ref.: #30980]	sucrose ChEBI	+	carbon source
[Ref.: #30980]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30980]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30980]		catalase	+	1.11.1.6
[Ref.: #30980]		gelatinase	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	sulfoquinovose degradation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	metabolism of disaccharids	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	sphingosine metabolism	66.67	4 of 6
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	propionate fermentation	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20496]	Sample type/isolated from	deep-sea water
[Ref.: #20496]	Geographic location (country and/or sea, region)	southwest Indian Ocean (49° 39' E 37° 47' S, 2800 m depth)
[Ref.: #20496]	Country	China
[Ref.: #20496]	Country ISO 3 Code	CHN
[Ref.: #20496]	Continent	Asia
[Ref.: #20496]	Geographic location	-37.7833°/49.6500°

[Ref.: #67770]	Sample type/isolated from	Deep-sea water from the southwest Indian Ocean (37° 47' S 49° 39' E) at a depth of 2,800 m
[Ref.: #67770]	Geographic location	-37.7833°/49.6500°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20496]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20496]	Cellulomonas marina strain FXJ8.089 16S ribosomal RNA gene, partial sequence	JF346422	1445	ENA	988821 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cellulomonas marina CGMCC 4.6945	GCA_900111925	contig	GenBank	988821 tax ID
[Ref.: #66792]	Cellulomonas marina NBRC 110784	GCA_016862715	contig	GenBank	988821 tax ID	*
[Ref.: #66792]	Cellulomonas marina strain CGMCC 4.6945	988821.3	wgs	PATRIC	988821 tax ID	*
[Ref.: #66792]	Cellulomonas marina strain NBRC 110784	988821.4	wgs	PATRIC	988821 tax ID	*
[Ref.: #66792]	Cellulomonas marina CGMCC 4.6945	2675903053	draft	JGI IMG/M	988821 tax ID	*

[Ref.: #20496]	GC-content	70.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30980]	GC-content	70.3 mol%
[Ref.: #67770]	GC-content	75.6 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cellulomonas marina strain NBRC 110784 PATRIC: 988821.4
[Ref.: #69481]	spore-forming	yes	85	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cellulomonas marina strain CGMCC 4.6945 PATRIC: 988821.3
[Ref.: #69480]	motile	yes	80.633	no
[Ref.: #69480]	flagellated	no	88.877	no
[Ref.: #69480]	gram-positive	yes	90.601	yes
[Ref.: #69480]	anaerobic	no	99.064	no
[Ref.: #69480]	halophile	no	91.039	no
[Ref.: #69480]	spore-forming	no	91.144	yes
[Ref.: #69480]	glucose-util	yes	87.621	yes
[Ref.: #69480]	aerobic	yes	89.12	no
[Ref.: #69480]	thermophile	no	98.802	yes
[Ref.: #69480]	glucose-ferment	no	75.28	no

Availability in culture collections External links

[Ref.: #20496]

Culture collection no.

DSM 24960, CGMCC 4.6945, NBRC 110784, JCM 30777

[Ref.: #87857]

SI-ID 405346

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulomonas citrea sp. nov., isolated from paddy soil.	Lee HJ, Kim SY, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004409	2020	*
Phylogeny	Cellulomonas marina sp. nov., isolated from deep-sea water.	Zhang L, Xi L, Qiu D, Song L, Dai X, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.048876-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20496

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24960

#30980

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27310 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87857

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405346.1 )

#27310

IJSEM 3014 2013 ( DOI 10.1099/ijs.0.048876-0 , PubMed 23396721 )

* These data were automatically processed and therefore are not curated

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Cellulomonas marina strain NBRC 110784

Cellulomonas marina strain CGMCC 4.6945

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