Name: Brevibacterium daeguense 2C6-41
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23808

Type strain:

Species: Brevibacterium daeguense

Strain Designation: 2C6-41, 2C6-41N

Culture col. no.: DSM 27938, JCM 17458, KCTC 19800

Strain history: <- MJ Lee, H-Plus Eco, Korea

NCBI tax ID(s): 909936 (species)

SI-ID 401727

DSM 27938

Special Collections

Section

Brevibacterium daeguense 2C6-41 is an aerobe, Gram-positive bacterium that was isolated from activated sludge from industrial wastewater treatment plant.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Brevibacteriaceae*
	Genus	*Brevibacterium*
	Species	**Brevibacterium daeguense**
	Full Scientific Name (LPSN)	Brevibacterium daeguense Cui et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30529]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.381

[Ref.: #30529]	Cell length	1.125 µm

[Ref.: #30529]	Cell width	0.65 µm

[Ref.: #30529]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20482]

Culture medium

RICH MEDIUM (DSMZ Medium 736)

[Ref.: #20482]

Culture medium growth

[Ref.: #20482]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20482]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20482]	growth	28 °C
[Ref.: #30529]	growth	10-42 °C
[Ref.: #30529]	optimum	26 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30529]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30529]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30529]		NaCl		growth	0-5	%
[Ref.: #30529]		NaCl		optimum	2.5	%

[Ref.: #67770]	Observation	quinones: MK-8(H₂)
[Ref.: #67771]	Observation	quinones: MK-8(H2)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30529]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #30529]	acetate ChEBI	+	carbon source
[Ref.: #30529]	adipate ChEBI	+	carbon source
[Ref.: #30529]	gluconate ChEBI	+	carbon source
[Ref.: #30529]	glycogen ChEBI	+	carbon source
[Ref.: #30529]	lactate ChEBI	+	carbon source
[Ref.: #30529]	malate ChEBI	+	carbon source
[Ref.: #30529]	nitrate ChEBI	+	reduction
[Ref.: #30529]	suberic acid ChEBI	+	carbon source
[Ref.: #30529]	valerate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30529]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20482]	Sample type/isolated from	activated sludge from industrial wastewater treatment plant
[Ref.: #20482]	Geographic location (country and/or sea, region)	Daegu
[Ref.: #20482]	Country	Republic of Korea
[Ref.: #20482]	Country ISO 3 Code	KOR
[Ref.: #20482]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Activated sludge from an industrial wastewater treatment plant
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daegu
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From the activated sludge, an industrial wastewater treatment plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daegu
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Industrial wastewater
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ246162 (>99% sequence identity) for Brevibacterium daeguense subclade from Microbeatlas

Aquatic Samples	64
Soil Samples	189
Animal Samples	435
Plant Samples	26
Total Samples	714

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20482]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20482]	Brevibacterium daeguense strain 2C6-41 16S ribosomal RNA gene, partial sequence	HQ246162	1365	GenBank ENA	909936 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevibacterium daeguense DSM 27938	GCA_021729135	contig	GenBank ENA	909936 tax ID	*

[Ref.: #20482]	GC-content	66.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30529]	GC-content	66.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevibacterium daeguense DSM 27938 NCBI: GCA_021729135.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.381	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.533	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.365	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.292	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	yes

Availability in culture collections External links

[Ref.: #20482]

Culture collection no.

DSM 27938, JCM 17458, KCTC 19800

[Ref.: #87838]

SI-ID 401727

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevibacterium rongguiense sp. nov., isolated from freshwater sediment.	Deng T, Lu H, Qian Y, Chen X, Yang X, Guo J, Sun G, Xu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004379	2020	*
Phylogeny	Brevibacterium jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.	Choi EJ, Lee SH, Jung JY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.049197-0	2013	*
Phylogeny	Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture.	Cui Y, Kang MS, Woo SG, Jin L, Kim KK, Park J, Lee M, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.038141-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20482

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27938

#30529

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26861 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87838

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401727.1 )

#26861

IJSEM 152 2013 ( DOI 10.1099/ijs.0.038141-0 , PubMed 22368170 )

* These data were automatically processed and therefore are not curated

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Brevibacterium daeguense DSM 27938

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