Georgenia daeguensis (DSM 25321, JCM 17459, KCTC 19801)

Name: Georgenia daeguensis (DSM 25321, JCM 17459, KCTC 19801)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23794

Type strain

Strain Designation 2C6-43, 2C6-43N

Culture col. no. DSM 25321 JCM 17459 KCTC 19801 2C6-43 2C6-43N

NCBI tax ID(s) 908355

Special Collections DSMZ JCM KCTC Literature strains

History <- KCTC; KCTC 19801 S.-T. Lee 2C6-43. <- MJ Lee, H-Plus Eco, Korea

Links

Georgenia daeguensis 2C6-43 is an aerobe, Gram-positive, motile bacterium that was isolated from activated sludge from an industrial wastewater treatment plant.

Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403850

KCTC 19801,JCM 17459,DSM 25321

@ref 20215

Last LPSN update 2026-02-09 11:23:48

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Allobogoriellaceae

Genus Georgenia

Species Georgenia daeguensis

Full scientific name Georgenia daeguensis Woo et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30311	positive	0.65 µm	0.4 µm	rod-shaped
67771	positive

Pigmentation

30311

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20588	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20588	positive	growth	28
30311	positive	growth	10-42
30311	positive	optimum	27.5
67770	positive	growth	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
30311	positive	optimum	7
30311	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30311	aerobe
67771	aerobe

Spore formation

30311

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30311	NaCl	positive	growth	1-9 %

Observation

@ref	Observation
67770	quinones: MK-8(H₄)
67771	quinones: MK-8(H4)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30311	24265 ChEBI	gluconate	+	carbon source
30311	17234 ChEBI	glucose	+	carbon source
30311	28087 ChEBI	glycogen	+	carbon source
30311	17306 ChEBI	maltose	+	carbon source
30311	17632 ChEBI	nitrate	+	reduction
30311	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30311	catalase	+	1.11.1.6
30311	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Industrial wastewater
#Engineered	#Waste	#Water treatment plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20588	activated sludge from an industrial wastewater treatment plant	Daegu	Republic of Korea	KOR	Asia
67770	Activated sludge from industrial wastewater treatment plant	Daegu	Republic of Korea	KOR	Asia
67771	From activated sludge		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ246163 (>99% sequence identity) for Georgenia from Microbeatlas

Aquatic Samples	81
Soil Samples	512
Animal Samples	46
Plant Samples	37
Total Samples	676

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20588	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953770v1 assembly for Georgenia daeguensis JCM 17459	scaffold	GCA_039537705	908355	57.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20588	Georgenia daeguensis strain 2C6-43 16S ribosomal RNA gene, partial sequence	HQ246163	1382		908355

GC content

@ref	GC-content (mol%)	Method
20588	66.2	high performance liquid chromatography (HPLC)
30311	66.2

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Georgenia subflava sp. nov., isolated from a deep-sea sediment.	Wang S, Xu X, Wang L, Jiao K, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000553	2015
Phylogeny	Georgenia daeguensis sp. nov., isolated from 4-chlorophenol enrichment culture.	Woo SG, Cui Y, Kang MS, Jin L, Kim KK, Lee ST, Lee M, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.033217-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20588	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25321
#26652	IJSEM 1703 2012 ( DOI 10.1099/ijs.0.033217-0 , PubMed 21930682 )
#30311	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26652
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Georgenia daeguensis (DSM 25321, JCM 17459, KCTC 19801)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039537705

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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