Name: Bartonella florencae R4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23785

Type strain:

Species: Bartonella florencae

Strain Designation: R4

Culture col. no.: DSM 23735, CSUR B627

Strain history: <- O. Mediannikov, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France; R4

NCBI tax ID(s): 928210 (species)

SI-ID 397957

DSM 23735

Section

Bartonella florencae R4 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from spleen of a shrew found dead without evident signs of trauma.

Gram-negative
animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Bartonellaceae*
	Genus	*Bartonella*
	Species	**Bartonella florencae**
	Full Scientific Name (LPSN)	Bartonella florencae corrig. Mediannikov et al. 2014

Synonym

Bartonella florenciae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #20455]	Type of hemolysis	gamma
[Ref.: #20455]	Incubation period	2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20455]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #20455]

Culture medium growth

[Ref.: #20455]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20455]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20455]			growth	37 °C

[Ref.: #20455]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20455]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20455]	Sample type/isolated from	spleen of a shrew (Crocidura russula) found dead without evident signs of trauma
[Ref.: #20455]	Host species	Crocidura russula
[Ref.: #20455]	Geographic location (country and/or sea, region)	Marseille suburb, calanque d’En-Vau
[Ref.: #20455]	Country	France
[Ref.: #20455]	Country ISO 3 Code	FRA
[Ref.: #20455]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Other	#Decomposing animal
#Host	#Mammals	-
#Host Body-Site	#Organ	#Spleen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM622139 (>99% sequence identity) for Bartonella from Microbeatlas

Aquatic Samples	22
Soil Samples	29
Animal Samples	118
Plant Samples	3
Total Samples	172

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20455]	Pathogenicity (animal)	yes
[Ref.: #20455]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20455]	Bartonella florencae strain R4 from France 16S ribosomal RNA gene, partial sequence	HM622139	1411	ENA	928210 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bartonella florencae R4	GCA_000312525	scaffold	GenBank	928210 tax ID	*

[Ref.: #20455]

GC-content

38.5 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bartonella florencae R4 NCBI: GCA_000312525.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bartonella florencae R4 NCBI: GCA_000312525.1
[Ref.: #69480]	motile	no	90.064	no
[Ref.: #69480]	flagellated	no	97.9	no
[Ref.: #69480]	gram-positive	no	98.282	no
[Ref.: #69480]	anaerobic	no	97.84	yes
[Ref.: #69480]	aerobic	no	95.487	yes
[Ref.: #69480]	halophile	no	59.229	no
[Ref.: #69480]	spore-forming	no	97.195	no
[Ref.: #69480]	glucose-util	no	50.934	no
[Ref.: #69480]	thermophile	no	91.487	yes
[Ref.: #69480]	glucose-ferment	no	77.174	no

Availability in culture collections External links

[Ref.: #20455]

Culture collection no.

DSM 23735, CSUR B627

[Ref.: #87817]

SI-ID 397957

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20455

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23735

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87817

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397957.1 )

* These data were automatically processed and therefore are not curated

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