Cellulomonas composti (DSM 25222, JCM 14898, KCTC 19030)

Name: Cellulomonas composti (DSM 25222, JCM 14898, KCTC 19030)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2371

Type strain

Strain Designation TR7-06

Culture col. no. DSM 25222 JCM 14898 KCTC 19030 NBRC 100758 TR7-06

NCBI tax ID(s) 1305857 266130

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- KCTC <- S.-T. Lee, KAIST; TR7-06 JCM <-- NBRC 100758 <-- S.-T. Lee TR7-06. KCTC <- ST Lee, KAIST

Links

Cellulomonas composti TR7-06 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from compost from a cattle farm.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 232296

KCTC 19030,NBRC 100758,JCM 14898,DSM 25222

@ref 20215

Last LPSN update 2026-05-29 08:25:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Cellulomonadaceae

Genus Cellulomonas

Species Cellulomonas composti

Full scientific name Cellulomonas composti Kang et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31943	positive	rod-shaped
67771	positive
125439	positive		98.242
125438			93

Pigmentation

31943

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17943	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17943	positive	growth	28
31943	positive	optimum	30
67770	positive	growth	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
31943	positive	optimum	6.8-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31943	aerobe
67771	aerobe
125439	obligate aerobe	99.848

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31943	NaCl	positive	growth	01-10 %
31943	NaCl	positive	optimum	5.5 %

Observation

@ref	Observation
67770	quinones: MK-9(H₄)
67771	quinones: MK-9(H4)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31943	4853 ChEBI	esculin	+	hydrolysis
31943	5291 ChEBI	gelatin	+	carbon source
31943	17234 ChEBI	glucose	+	carbon source
31943	17306 ChEBI	maltose	+	carbon source
31943	17632 ChEBI	nitrate	+	reduction
31943	17992 ChEBI	sucrose	+	carbon source
31943	18222 ChEBI	xylose	+	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	sulfopterin metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	threonine metabolism	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	teichoic acid biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	heme metabolism	92.86	13 of 14
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	metabolism of disaccharids	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipoate biosynthesis	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	valine metabolism	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	pyrimidine metabolism	75.56	34 of 45
66794	isoleucine metabolism	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	glutamate and glutamine metabolism	75	21 of 28
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	Entner Doudoroff pathway	70	7 of 10
66794	purine metabolism	69.15	65 of 94
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	citric acid cycle	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	histidine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	leucine metabolism	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	myo-inositol biosynthesis	60	6 of 10
66794	lipid metabolism	58.06	18 of 31
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	oxidative phosphorylation	56.04	51 of 91
66794	tryptophan metabolism	55.26	21 of 38
66794	lysine metabolism	52.38	22 of 42
66794	coenzyme M biosynthesis	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	propionate fermentation	50	5 of 10
66794	degradation of pentoses	50	14 of 28
66794	butanoate fermentation	50	2 of 4
66794	arginine metabolism	50	12 of 24
66794	phenylmercury acetate degradation	50	1 of 2
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	sulfate reduction	46.15	6 of 13
66794	carotenoid biosynthesis	45.45	10 of 22
66794	phenol degradation	45	9 of 20
66794	lipid A biosynthesis	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	glutathione metabolism	42.86	6 of 14
66794	propanol degradation	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	glycine metabolism	40	4 of 10
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	sulfoquinovose degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	vitamin B1 metabolism	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	degradation of sugar acids	28	7 of 25
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	alginate biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Livestock (Husbandry)
#Engineered	#Biodegradation	#Composting
#Host	#Mammals	#Bovinae (Cow, Cattle)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17943	compost from a cattle farm	near Daejeon	Republic of Korea	KOR	Asia
67770	Compost from a cattle farm near Daejeon		Republic of Korea	KOR	Asia
67771	Compost from a cattle farm near Daejeon		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB166887 (>99% sequence identity) for Cellulomonas composti from Microbeatlas

Aquatic Samples	0
Soil Samples	6
Animal Samples	1
Plant Samples	0
Total Samples	7

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17943	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM799024v1 assembly for Cellulomonas composti NBRC 100758	contig	GCA_007990245	266130.4		266130	70.96
66792	ASM131404v1 assembly for Cellulomonas composti JCM 14898	contig	GCA_001314045	1305857.3	2734481969	1305857	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17943	Cellulomonas composti gene for 16S rRNA, partial sequence	AB166887	1453		266130

GC content

@ref	GC-content (mol%)	Method
17943	73.7	high performance liquid chromatography (HPLC)
31943	73.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM799024v1 assembly for Cellulomonas composti NBRC 100758
BV-BRC: 266130.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.85	no
125439	gram_stain	BacteriaNetⓘ	positive	98.24	no
125439	motility	BacteriaNetⓘ	no	76.50	no
125439	spore_formation	BacteriaNetⓘ	no	72.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulomonas composti JCM 14898
PATRIC: 1305857.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.83	no
125438	anaerobic	anaerobicⓘ	no	77.65	yes
125438	spore-forming	spore-formingⓘ	no	83.63	no
125438	aerobic	aerobicⓘ	no	56.26	yes
125438	thermophilic	thermophileⓘ	no	89.40	yes
125438	flagellated	motile2+ⓘ	no	93.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulomonas citrea sp. nov., isolated from paddy soil.	Lee HJ, Kim SY, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004409	2020
Phylogeny	Cellulomonas aurantiaca sp. nov., isolated from a soil sample from a tangerine field.	Kim SK, Kook M, Yan ZF, Trinh H, Zheng SD, Yang JE, Park SY, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-019-01288-2	2019
Phylogeny	Cellulomonas phragmiteti sp. nov., a cellulolytic bacterium isolated from reed (Phragmites australis) periphyton in a shallow soda pond.	Rusznyak A, Toth EM, Schumann P, Sproer C, Makk J, Szabo G, Vladar P, Marialigeti K, Borsodi AK	Int J Syst Evol Microbiol	10.1099/ijs.0.022608-0	2010
Phylogeny	Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost.	Kang MS, Im WT, Jung HM, Kim MK, Goodfellow M, Kim KK, Yang HC, An DS, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63974-0	2007

References

#17943	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25222
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28199	IJSEM 1276 2007 ( DOI 10.1099/ijs.0.64692-0 , PubMed 17551043 )
#31943	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28199
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cellulomonas composti (DSM 25222, JCM 14898, KCTC 19030)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_007990245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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