Cellulomonas terrae (DSM 17791, KCTC 19081, NBRC 100819)

Name: Cellulomonas terrae (DSM 17791, KCTC 19081, NBRC 100819)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2370

Type strain

Strain Designation DB 5, DB5

Culture col. no. DSM 17791 KCTC 19081 NBRC 100819 DB 5 JCM 14899 2 more

NCBI tax ID(s) 1305858 311234

Special Collections DSMZ JCM KCTC CIP Literature strains

Links

Cellulomonas terrae DB 5 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from garden soil.

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 232311

KCTC 19081,NBRC 100819,DSM 17791,JCM 14899,CIP 108880

@ref 20215

Last LPSN update 2025-12-16 09:47:18

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Cellulomonadaceae

Genus Cellulomonas

Species Cellulomonas terrae

Full scientific name Cellulomonas terrae An et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31503	positive	rod-shaped
67771	positive
123451	positive	rod-shaped
125438			96.25
125439	positive		99.8

Colony morphology

Pigmentation

31503

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7186	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
38352	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123451	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7186	positive	growth	28	mesophilic
31503	positive	growth	04-45
38352	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic
123451	positive	growth	15-37
123451	negative	growth	10
123451	negative	growth	41
123451	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31503	facultative anaerobe
67771	aerobe
123451	obligate aerobe
125439	obligate aerobe	99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31503	NaCl	positive	growth	<4 %
123451	NaCl	positive	growth	0-6 %
123451	NaCl		growth	8 %
123451	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31503	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
31503	22599 ChEBI	arabinose	+	carbon source
31503	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31503	4853 ChEBI	esculin	+	hydrolysis
123451	4853 ChEBI	esculin	+	hydrolysis
31503	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31503	28260 ChEBI	galactose	+	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31503	17234 ChEBI	glucose	+	carbon source
31503	17754 ChEBI	glycerol	+	carbon source
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
31503	28087 ChEBI	glycogen	+	carbon source
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
123451	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31503	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
31503	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
31503	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31503	506227 ChEBI	N-acetylglucosamine	+	carbon source
31503	17632 ChEBI	nitrate	+	reduction
123451	17632 ChEBI	nitrate	+	reduction
123451	17632 ChEBI	nitrate	-	respiration
123451	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
31503	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
31503	26546 ChEBI	rhamnose	+	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
31503	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
31503	27082 ChEBI	trehalose	+	carbon source
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
31503	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123451	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123451	15688 ChEBI	acetoin	-
123451	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123451	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123451	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
123451	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123451	caseinase	+	3.4.21.50
123451	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123451	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123451	gamma-glutamyltransferase	-	2.3.2.2
123451	gelatinase	-
123451	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123451	lipase	-
68382	lipase (C 14)	-		from API zym
123451	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123451	ornithine decarboxylase	-	4.1.1.17
123451	oxidase	-
123451	phenylalanine ammonia-lyase	-	4.3.1.24
123451	protease	-
68382	trypsin	-	3.4.21.4	from API zym
123451	tryptophan deaminase	-
123451	tween esterase	-
123451	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123451	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123451	not determinedn.d.	+	-	-	+	-	+	-	-	-	+/-	+	+	+	-	-	-	-	-	-	-	+/-	+/-	+/-	+/-	+/-	+/-	+	+	-	+	+	+/-	-	+	+	+	+	-	+/-	+	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7186	garden soil	Daejon	Republic of Korea	KOR	Asia
67770	Soil	Daejeon	Republic of Korea	KOR	Asia
67771	From soil		Republic of Korea	KOR	Asia
123451	Environment, Soil	Yusong, Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY884570 (>99% sequence identity) for Cellulomonas terrae from Microbeatlas

Aquatic Samples	80
Soil Samples	628
Animal Samples	97
Plant Samples	91
Total Samples	896

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7186	1	Risk group (German classification) According to TRBA 466
123451	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score	IMG accession
67770	ASM799026v1 assembly for Cellulomonas terrae NBRC 100819	contig	GCA_007990265	311234.4	311234	67.68
66792	ASM131406v1 assembly for Cellulomonas terrae JCM 14899	contig	GCA_001314065	1305858.3	1305858		2734481970

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7186	Cellulomonas terrae 16S ribosomal RNA gene, partial sequence	AY884570	1475		311234

GC content

@ref	GC-content (mol%)	Method
7186	73.9
67770	73.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cellulomonas terrae JCM 14899
NCBI: GCA_001314065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	70.70	no
125439	motility	BacteriaNetⓘ	no	77.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulomonas terrae JCM 14899
PATRIC: 1305858.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.54	yes
125438	anaerobic	anaerobicⓘ	no	91.48	yes
125438	spore-forming	spore-formingⓘ	no	75.26	no
125438	aerobic	aerobicⓘ	yes	61.46	no
125438	thermophilic	thermophileⓘ	no	90.80	yes
125438	flagellated	motile2+ⓘ	no	96.25	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulomonas shaoxiangyii sp. nov., isolated from faeces of Tibetan antelope (Pantholops hodgsonii) on the Qinghai-Tibet Plateau.	Tian Z, Lu S, Jin D, Yang J, Pu J, Lai XH, Ren ZH, Wu XM, Li J, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003939	2020
Phylogeny	Cellulomonas rhizosphaerae sp. nov., a novel actinomycete isolated from soil.	Tian Y, Han C, Hu J, Zhao J, Zhang C, Guo X, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003258	2019
Phylogeny	Cellulomonas terrae sp. nov., a cellulolytic and xylanolytic bacterium isolated from soil.	An DS, Im WT, Yang HC, Kang MS, Kim KK, Jin L, Kim MK, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63696-0	2005

References

#7186	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17791
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31503	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27801 (see below)
#38352	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123451	Collection of Institut Pasteur ; Curators of the CIP; CIP 108880
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cellulomonas terrae (DSM 17791, KCTC 19081, NBRC 100819)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_007990265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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