Name: Peribacillus endoradicis DSM 28131
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23708

Type strain:

Species: Peribacillus endoradicis

Culture col. no.: DSM 28131, CCBAU 05776, HAMBI 3097, LMG 25492

Strain history: <- LMG; LMG 25492 <- Y. Zhang

NCBI tax ID(s): 718002 (species)

SI-ID 366640

LMG 25492, HAMBI 3097, DSM 28131

Special Collections

DSMZ

Section

Peribacillus endoradicis DSM 28131 is a spore-forming, mesophilic bacterium that was isolated from inner tissue of soybean roots.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Peribacillus*
	Species	**Peribacillus endoradicis**
	Full Scientific Name (LPSN)	Peribacillus endoradicis (Zhang et al. 2012) Patel and Gupta 2020

Synonym

Bacillus endoradicis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20436]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20436]

Culture medium growth

[Ref.: #20436]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20436]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20436]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20436]	Sample type/isolated from	inner tissue of soybean roots
[Ref.: #20436]	Geographic location (country and/or sea, region)	Hebei Province, Shijiazhuang city
[Ref.: #20436]	Country	China
[Ref.: #20436]	Country ISO 3 Code	CHN
[Ref.: #20436]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU434676 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	6
Soil Samples	31
Animal Samples	53
Plant Samples	4
Total Samples	94

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20436]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20436]	Bacillus endoradicis strain CCBAU 05776 16S ribosomal RNA gene, partial sequence	GU434676	1398	GenBank ENA	718002 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Peribacillus endoradicis strain DSM 28131	718002.3	wgs	PATRIC	718002 tax ID	*
[Ref.: #66792]	Peribacillus endoradicis DSM 28131	2901201504	draft	JGI IMG/M	718002 tax ID	*

[Ref.: #20436]

GC-content

40.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Peribacillus endoradicis strain DSM 28131 PATRIC: 718002.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Peribacillus endoradicis strain DSM 28131 PATRIC: 718002.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	69.395	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.883	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.869	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	62.576	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.413	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.804	no

Availability in culture collections External links

[Ref.: #20436]

Culture collection no.

DSM 28131, CCBAU 05776, HAMBI 3097, LMG 25492

[Ref.: #87754]

SI-ID 366640

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Peribacillus faecalis sp. nov., a moderately halophilic bacterium isolated from the faeces of a cow.	Jiang L, Jung WY, Li Z, Lee MK, Park SH, Kang SW, Lee JS, Jung H, Hur TY, Kim HB, Kim JK, Lee JH, Lee JH, Lee J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004721	2021	*
Phylogeny	Bacillus endoradicis sp. nov., an endophytic bacterium isolated from soybean root.	Zhang YZ, Chen WF, Li M, Sui XH, Liu HC, Zhang XX, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.028936-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20436

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28131

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87754

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID366640.1 )

* These data were automatically processed and therefore are not curated

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Peribacillus endoradicis strain DSM 28131

Peribacillus endoradicis strain DSM 28131

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