Eoetvoesiella caeni (DSM 25520, NCAIM B 02512, PB3-7B)

Name: Eoetvoesiella caeni (DSM 25520, NCAIM B 02512, PB3-7B)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23549

Type strain

Strain Designation PB3-7B

Culture col. no. DSM 25520 NCAIM B 02512 PB3-7B

NCBI tax ID(s) 645616

Special Collections DSMZ Literature strains

History DSMZ <- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; PB3-7B

Links

Eoetvoesiella caeni PB3-7B is a bacterium that was isolated from activated sludge of a reactor treating coke plant effluent.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407081

NCAIM B 02512,DSM 25520

@ref 20215

Last LPSN update 2026-05-29 08:30:27

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Eoetvoesiella

Species Eoetvoesiella caeni

Full scientific name Eoetvoesiella caeni (Felföldi et al. 2014) Deshmukh and Oren 2023

Synonyms (1)

Eoetvoesia caeni

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.236

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21341	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535c)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535c) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Tween 80 10.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21341	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.964

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	gallate degradation	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ethanol fermentation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin B1 metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	starch degradation	90	9 of 10
66794	phenol degradation	90	18 of 20
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	3-phenylpropionate degradation	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	peptidoglycan biosynthesis	80	12 of 15
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	serine metabolism	77.78	7 of 9
66794	methionine metabolism	76.92	20 of 26
66794	tryptophan metabolism	76.32	29 of 38
66794	purine metabolism	75.53	71 of 94
66794	butanoate fermentation	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	tyrosine metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	oxidative phosphorylation	67.03	61 of 91
66794	cyanate degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	alanine metabolism	65.52	19 of 29
66794	histidine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	pyrimidine metabolism	62.22	28 of 45
66794	sulfate reduction	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	hydrogen production	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	degradation of sugar acids	60	15 of 25
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	lysine metabolism	57.14	24 of 42
66794	degradation of sugar alcohols	56.25	9 of 16
66794	d-mannose degradation	55.56	5 of 9
66794	arginine metabolism	54.17	13 of 24
66794	quinate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	lactate fermentation	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	polyamine pathway	47.83	11 of 23
66794	urea cycle	46.15	6 of 13
66794	carotenoid biosynthesis	45.45	10 of 22
66794	arachidonic acid metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	degradation of pentoses	42.86	12 of 28
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	lipoate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	d-xylose degradation	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	daunorubicin biosynthesis	22.22	2 of 9
66794	vitamin B12 metabolism	20.59	7 of 34

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Industrial wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21341	activated sludge of a reactor treating coke plant effluent	Budapest, Eötvös Loránd University	Hungary	HUN	Europe

Taxonmaps

69479

Global distribution of 16S sequence FJ948170 (>99% sequence identity) for Eoetvoesia caeni subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	51
Animal Samples	28
Plant Samples	14
Total Samples	151

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21341	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4268560v1 assembly for Eoetvoesiella caeni NCAIM B.02512	contig	GCA_042685605			645616	76.99
66792	ASM1341654v1 assembly for Eoetvoesiella caeni PB3-7B	contig	GCA_013416545	645616.4		645616	67.91
66792	ASM331517v1 assembly for Eoetvoesiella caeni DSM 25520	scaffold	GCA_003315175	645616.3	2770939557	645616	66.17
124043	ASM4243461v1 assembly for Eoetvoesiella caeni NCAIM B.02512	contig	GCA_042434615			645616	64.99
66792	ASM2268882v1 assembly for Eoetvoesiella caeni PB3-7B	contig	GCA_022688825	645616.5	8117091712	645616	59.85

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
21341	Eoetvoesia caeni strain PB3-7B 16S ribosomal RNA gene, partial sequence	FJ948170	1453	645616
124043	Eoetvoesia caeni strain NCAIM B.02512 16S ribosomal RNA gene, partial sequence.	MT759962	1349	645616
124043	Eoetvoesia caeni strain NCAIM B.02512 16S ribosomal RNA gene, partial sequence.	MT758120	1349	645616

GC content

@ref	GC-content (mol%)	Method
21341	59.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4268560v1 assembly for Eoetvoesiella caeni NCAIM B.02512
NCBI: GCA_042685605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	68.62	no
125439	motility	BacteriaNetⓘ	yes	83.22	no
125439	gram_stain	BacteriaNetⓘ	negative	99.24	no
125439	spore_formation	BacteriaNetⓘ	no	99.96	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Eoetvoesia caeni DSM 25520
NCBI: GCA_003315175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	70.38	yes
125438	anaerobic	anaerobicⓘ	no	97.17	yes
125438	aerobic	aerobicⓘ	yes	75.48	yes
125438	spore-forming	spore-formingⓘ	no	67.79	yes
125438	thermophilic	thermophileⓘ	no	96.42	no
125438	flagellated	motile2+ⓘ	yes	82.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pusillimonas maritima sp. nov., isolated from surface seawater.	Li J, Qi M, Lai Q, Dong C, Liu X, Wang G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004202	2020
Phylogeny	Eoetvoesia caeni gen. nov., sp. nov., isolated from an activated sludge system treating coke plant effluent.	Felfoldi T, Vengring A, Keki Z, Marialigeti K, Schumann P, Toth EM	Int J Syst Evol Microbiol	10.1099/ijs.0.058875-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21341	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25520
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Eoetvoesiella caeni (DSM 25520, NCAIM B 02512, PB3-7B)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042685605

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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