Name: Globicatella sulfidifaciens DSM 15739
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 234

Type strain:

Species: Globicatella sulfidifaciens

Culture col. no.: DSM 15739, CCUG 44365, CIP 107175, LMG 18844, GEM 604

Strain history: CIP <- 2001, CCUG <- 1900, LMG

NCBI tax ID(s): 1121925 (strain), 136093 (species)

SI-ID 12460

LMG 18844, CCUG 44365, CIP 107175, DSM 15739

Other strains from Globicatella sulfidifaciens

G. sulfidifaciens CCUG 43454
G. sulfidifaciens CCUG 44524, LMG 18837
G. sulfidifaciens CCUG 44525, LMG 18847
G. sulfidifaciens CCUG 45719
G. sulfidifaciens CCUG 61287
G. sulfidifaciens CCUG 70344

Section

Globicatella sulfidifaciens DSM 15739 is a microaerophile, mesophilic, Gram-variable animal pathogen that forms circular colonies and was isolated from cattle lung.

coccus-shaped
colony-forming
Gram-variable
animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Aerococcaceae*
	Genus	*Globicatella*
	Species	**Globicatella sulfidifaciens**
	Full Scientific Name (LPSN)	Globicatella sulfidifaciens Vandamme et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #23374]	Gram stain	variable
[Ref.: #123381]	Gram stain	negative
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23374]	Cell shape	coccus-shaped
[Ref.: #123381]	Cell shape	coccus-shaped

[Ref.: #123381]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.415

[Ref.: #23374]	Type of hemolysis	alpha
[Ref.: #23374]	Hemolysis ability	1
[Ref.: #23374]	Colony size	0.5-1.0 mm
[Ref.: #23374]	Colony color	grey white
[Ref.: #23374]	Colony shape	circular
[Ref.: #23374]	Incubation period	2 days
[Ref.: #23374]	Cultivation medium used	blood agar

[Ref.: #123381]	Hemolysis ability	1

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6091]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6091]

Culture medium growth

[Ref.: #6091]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6091]

Culture medium composition

expand / minimize

[Ref.: #6091]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #6091]

Culture medium growth

[Ref.: #6091]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6091]

Culture medium composition

expand / minimize

[Ref.: #23374]

Culture medium

blood agar

[Ref.: #23374]

Culture medium growth

[Ref.: #33090]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #33090]

Culture medium growth

[Ref.: #33090]

Culture medium composition

expand / minimize

[Ref.: #123381]

Culture medium

CIP Medium 72

[Ref.: #123381]

Culture medium growth

[Ref.: #123381]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123381]

Culture medium

CIP Medium 29

[Ref.: #123381]

Culture medium growth

[Ref.: #123381]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6091]		growth	37 °C
[Ref.: #23374]		growth	25 °C
[Ref.: #23374]		optimum	37-42 °C
[Ref.: #33090]		growth	37 °C
[Ref.: #123381]		growth	30-37 °C
[Ref.: #123381]	no	growth	10 °C
[Ref.: #123381]	no	growth	25 °C
[Ref.: #123381]	no	growth	41 °C
[Ref.: #123381]	no	growth	45 °C

[Ref.: #6091]	Temperature range	mesophilic
[Ref.: #23374]	Temperature range	mesophilic
[Ref.: #33090]	Temperature range	mesophilic
[Ref.: #123381]	Temperature range	mesophilic
[Ref.: #123381]	Temperature range	psychrophilic
[Ref.: #123381]	Temperature range	mesophilic
[Ref.: #123381]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6091]	Oxygen tolerance	microaerophile
[Ref.: #23374]	Oxygen tolerance	facultative anaerobe
[Ref.: #123381]	Oxygen tolerance	microaerophile

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23374]		NaCl		maximum	6.5	%
[Ref.: #123381]		NaCl	no	growth	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123381]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23374]	glucose ChEBI	+	fermentation
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123381]	hippurate ChEBI	+	hydrolysis
[Ref.: #23374]	inulin ChEBI	+	builds acid from
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23374]	L-phenylalanine ChEBI	+	hydrolysis
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23374]	maltotriose ChEBI	-	builds acid from
[Ref.: #23374]	mannitol ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23374]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123381]	nitrate ChEBI	-	reduction
[Ref.: #123381]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23374]	ribose ChEBI	-	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #23374]	clindamycin ChEBI	no
[Ref.: #23374]	erythromycin ChEBI	no
[Ref.: #23374]	lincomycin ChEBI	no
[Ref.: #23374]	neomycin ChEBI	no

	Metabolite production	Metabolite	Production
[Ref.: #23374]		hydrogen sulfide ChEBI	yes
[Ref.: #123381]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #123381]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #123381]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123381]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #23374]	catalase	-	1.11.1.6
[Ref.: #123381]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123381]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123381]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123381]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123381]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123381]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123381]	10876	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123381]	10130	-	-	+	+	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6091]	Sample type/isolated from	cattle lung
[Ref.: #6091]	Country	Belgium
[Ref.: #6091]	Country ISO 3 Code	BEL
[Ref.: #6091]	Continent	Europe

[Ref.: #56278]	Sample type/isolated from	Cattle lung
[Ref.: #56278]	Geographic location (country and/or sea, region)	Torhout
[Ref.: #56278]	Country	Belgium
[Ref.: #56278]	Country ISO 3 Code	BEL
[Ref.: #56278]	Continent	Europe

[Ref.: #123381]	Sample type/isolated from	Animal, Cattle, lung
[Ref.: #123381]	Country	Belgium
[Ref.: #123381]	Country ISO 3 Code	BEL
[Ref.: #123381]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Oral cavity and airways	#Lung

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ297627 (>99% sequence identity) for Globicatella from Microbeatlas

Aquatic Samples	2884
Soil Samples	2839
Animal Samples	27100
Plant Samples	1227
Total Samples	34050

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6091]	Pathogenicity (animal)	yes
[Ref.: #6091]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123381]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6091]	Globicatella sulfidofaciens 16S rRNA gene	AJ297627	1490	ENA	136093 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Globicatella sulfidifaciens DSM 15739	GCA_900167405	scaffold	GenBank	1121925 tax ID	*
[Ref.: #66792]	Globicatella sulfidifaciens DSM 15739 strain DSM 15739	1121925.5	wgs	PATRIC	1121925 tax ID	*
[Ref.: #66792]	Globicatella sulfidifaciens DSM 15739	2524614644	draft	JGI IMG/M	1121925 tax ID	*

[Ref.: #6091]	GC-content	35.8 mol%
[Ref.: #23374]	GC-content	35.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Globicatella sulfidifaciens DSM 15739 DSM 15739 NCBI: GCA_900167405.1
[Ref.: #69481]	spore-forming	yes	51	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Globicatella sulfidifaciens DSM 15739 DSM 15739 NCBI: GCA_900167405.1
[Ref.: #69480]	motile	no	96.135	no
[Ref.: #69480]	flagellated	no	97.226	no
[Ref.: #69480]	gram-positive	yes	92.155	yes
[Ref.: #69480]	anaerobic	no	93.303	yes
[Ref.: #69480]	aerobic	no	92.027	no
[Ref.: #69480]	halophile	yes	78.83	no
[Ref.: #69480]	spore-forming	no	90.44	no
[Ref.: #69480]	thermophile	no	95.678	yes
[Ref.: #69480]	glucose-util	yes	89.165	no
[Ref.: #69480]	glucose-ferment	yes	72.143	no

Availability in culture collections External links

[Ref.: #6091]

Culture collection no.

DSM 15739, CCUG 44365, CIP 107175, LMG 18844, GEM 604

[Ref.: #69917]

SI-ID 12460

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Globicatella sulfidifaciens sp. nov., isolated from purulent infections in domestic animals.	Vandamme P, Hommez J, Snauwaert C, Hoste B, Cleenwerck I, Lefebvre K, Vancanneyt M, Swings J, Devriese LA, Haesebrouck F	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1745	2001	*

References

#6091

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15739

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23374

P Vandamme, J Hommez, C Snauwaert, B Hoste, I Cleenwerck, K Lefebvre, M Vancanneyt, J Swings, L A Devriese, F Haesebrouck: Globicatella sulfidifaciens sp. nov., isolated from purulent infections in domestic animals.. IJSEM 51: 1745 - 1749 2001 ( DOI 10.1099/00207713-51-5-1745 , PubMed 11594605 )

#33090 ; Curators of the CIP;
#56278 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44365

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69917

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12460.1 )

#123381 Collection of Institut Pasteur ; Curators of the CIP; CIP 107175
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Globicatella sulfidifaciens in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Globicatella sulfidifaciens DSM 15739 DSM 15739

Globicatella sulfidifaciens DSM 15739 DSM 15739

Change proposal

Change proposal