Ignavigranum ruoffiae (DSM 15695, ATCC 700630, CCUG 37658)

Name: Ignavigranum ruoffiae (DSM 15695, ATCC 700630, CCUG 37658)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 235

Type strain

Strain Designation 1607-97

Culture col. no. DSM 15695 ATCC 700630 CCUG 37658 CIP 105896 1607-97

NCBI tax ID(s) 89093

Special Collections DSMZ CCUG CIP Literature strains

History DSMZ <- CCUG <- M. D. Collins <- R. R. Facklam, CDC CIP <- 1999, P. Campbell, CDC: strain 1607-97

Links

Ignavigranum ruoffiae 1607-97 is a microaerophile, Gram-positive, coccus-shaped bacterium that was isolated from human wound.

Gram-positive coccus-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44048

ATCC 700630,CCUG 37658,CIP 105896,DSM 15695

@ref 20215

Last LPSN update 2026-05-29 08:24:59

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Aerococcaceae

Genus Ignavigranum

Species Ignavigranum ruoffiae

Full scientific name Ignavigranum ruoffiae Collins et al. 1999

BacDive ID	Other strains from **Ignavigranum ruoffiae** (3)	Type strain
149493	I. ruoffiae CCUG 37841
150826	I. ruoffiae CCUG 42496
156840	I. ruoffiae CCUG 65994

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23253	positive	coccus-shaped
122315	positive	coccus-shaped
125438			91.146

Colony morphology

122315

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6061	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
6061	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
39388	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122315	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6061	positive	growth	37
23253	positive	growth	45
39388	positive	growth	37
53788	positive	growth	37
122315	positive	growth	25-45
122315	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6061	microaerophile
23253	facultative anaerobe
53788	microaerophile
122315	facultative anaerobe
125439	obligate aerobe	97.377

Spore formation

23253

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23253	NaCl	positive	maximum	6.5 %
122315	NaCl	positive	growth	6.5 %

Murein

23253

TypeA1alpha L-Lys-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
23253	23456 ChEBI	cyclodextrin	-	builds acid from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
23253	18333 ChEBI	D-arabitol	-	builds acid from
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
23253	16024 ChEBI	D-mannose	-	builds acid from
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
23253	16988 ChEBI	D-ribose	-	builds acid from
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23253	65327 ChEBI	D-xylose	-	builds acid from
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23253	4853 ChEBI	esculin	-	hydrolysis
122315	4853 ChEBI	esculin	-	hydrolysis
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23253	5291 ChEBI	gelatin	-	hydrolysis
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
23253	17234 ChEBI	glucose	+	builds acid from
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
23253	28087 ChEBI	glycogen	-	builds acid from
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
23253	606565 ChEBI	hippurate	-	hydrolysis
122315	606565 ChEBI	hippurate	-	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23253	30849 ChEBI	L-arabinose	-	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23253	17716 ChEBI	lactose	-	builds acid from
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23253	29864 ChEBI	mannitol	+/-	builds acid from
23253	6731 ChEBI	melezitose	-	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23253	28053 ChEBI	melibiose	-	builds acid from
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
23253	17632 ChEBI	nitrate	-	reduction
122315	17632 ChEBI	nitrate	-	reduction
122315	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23253	27941 ChEBI	pullulan	-	builds acid from
23253	16634 ChEBI	raffinose	-	builds acid from
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
23253	30911 ChEBI	sorbitol	-	builds acid from
23253	28017 ChEBI	starch	-	hydrolysis
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
23253	17992 ChEBI	sucrose	+/-	builds acid from
23253	33954 ChEBI	tagatose	-	builds acid from
23253	27082 ChEBI	trehalose	-	builds acid from
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23253	15688 ChEBI	acetoin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
23253	15688 ChEBI	acetoin	-
122315	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122315	alcohol dehydrogenase	-	1.1.1.1
23253	alkaline phosphatase	-	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
23253	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
23253	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
23253	arginine dihydrolase	+	3.5.3.6
23253	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
122315	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
23253	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
23253	beta-mannosidase	-	3.2.1.25
23253	catalase	-	1.11.1.6
122315	catalase	-	1.11.1.6
23253	chymotrypsin	-	3.4.4.5
23253	cystine arylamidase	-	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122315	gamma-glutamyltransferase	-	2.3.2.2
23253	glycyl tryptophan arylamidase	-
23253	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
23253	lipase (C 14)	-
68382	lipase (C 14)	-		from API zym
122315	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122315	ornithine decarboxylase	-	4.1.1.17
122315	oxidase	-
23253	pyrazinamidase	-	3.5.1.B15
23253	pyroglutamic acid arylamidase	+
23253	tripeptide aminopeptidase	-	3.4.11.4
23253	trypsin	-	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
23253	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipoate biosynthesis	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	vitamin B12 metabolism	73.53	25 of 34
66794	flavin biosynthesis	73.33	11 of 15
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	propanol degradation	71.43	5 of 7
66794	pyrimidine metabolism	68.89	31 of 45
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	heme metabolism	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	purine metabolism	61.7	58 of 94
66794	NAD metabolism	61.11	11 of 18
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	oxidative phosphorylation	58.24	53 of 91
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	serine metabolism	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	lipid metabolism	54.84	17 of 31
66794	proline metabolism	54.55	6 of 11
66794	gluconeogenesis	50	4 of 8
66794	sphingosine metabolism	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	suberin monomers biosynthesis	50	1 of 2
66794	coenzyme A metabolism	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	phenylalanine metabolism	46.15	6 of 13
66794	histidine metabolism	44.83	13 of 29
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	valine metabolism	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	mevalonate metabolism	42.86	3 of 7
66794	glutamate and glutamine metabolism	42.86	12 of 28
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	citric acid cycle	42.86	6 of 14
66794	arachidonate biosynthesis	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	threonine metabolism	40	4 of 10
66794	methionine metabolism	38.46	10 of 26
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	isoleucine metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	alanine metabolism	34.48	10 of 29
66794	IAA biosynthesis	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	leucine metabolism	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	starch degradation	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	tetrahydrofolate metabolism	28.57	4 of 14
66794	vitamin B6 metabolism	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	tryptophan metabolism	26.32	10 of 38
66794	lysine metabolism	26.19	11 of 42
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	sulfopterin metabolism	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	androgen and estrogen metabolism	25	4 of 16
66794	glycogen biosynthesis	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	arachidonic acid metabolism	22.22	4 of 18
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	degradation of hexoses	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14
66794	arginine metabolism	20.83	5 of 24

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122315	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122315	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	+/-	+/-	-	-	+/-	-	+	+/-	+	+	+	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Other	#Wound

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
6061	human wound	Homo sapiens		USA	USA	North America
53788	Human wound	Homo sapiens	1995	USA	USA	North America
122315	Human, Wound	Homo sapiens		United States of America	USA	North America	1996

Taxonmaps

69479

Global distribution of 16S sequence Y16426 (>99% sequence identity) for Ignavigranum ruoffiae subclade from Microbeatlas

Aquatic Samples	64
Soil Samples	123
Animal Samples	1049
Plant Samples	26
Total Samples	1262

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6061	2	Risk group (German classification) According to TRBA 466
122315	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2634166308 annotated assembly for Ignavigranum ruoffiae DSM 15695	scaffold	GCA_900110675	89093.3	2634166308	89093	68.69

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Ignavigranum ruoffiae strain CCUG 37658 16S-23S ribosomal RNA intergenic spacer, complete sequence	JQ012778	197	89093
6061	Ignavigranum ruoffiae 16S rRNA gene	Y16426	1417	89093
124043	Ignavigranum ruoffiae strain CCUG 37658(T) 16S ribosomal RNA gene, partial sequence.	MW111229	788	89093

GC content

@ref	GC-content (mol%)	Method
6061	40
23253	40.00	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2634166308 annotated assembly for Ignavigranum ruoffiae DSM 15695
NCBI: GCA_900110675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.38	no
125439	gram_stain	BacteriaNetⓘ	positive	61.17	no
125439	motility	BacteriaNetⓘ	no	72.11	no
125439	spore_formation	BacteriaNetⓘ	no	88.13	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ignavigranum ruoffiae DSM 15695
NCBI: GCA_900110675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.14	yes
125438	anaerobic	anaerobicⓘ	no	86.29	yes
125438	aerobic	aerobicⓘ	no	92.00	yes
125438	spore-forming	spore-formingⓘ	no	80.81	no
125438	thermophilic	thermophileⓘ	no	93.41	yes
125438	flagellated	motile2+ⓘ	no	91.15	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ignavigranum ruoffiae sp. nov., isolated from human clinical specimens.	Collins MD, Lawson PA, Monasterio R, Falsen E, Sjoden B, Facklam RR	Int J Syst Bacteriol	10.1099/00207713-49-1-97	1999

References

#6061	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15695
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23253	Matthew D. Collins, Paul A. Lawson, Rafael Monasterio, Enevold Falsen, Berit Sjödén, Richard R. Facklam: Ignavigranum ruoffiae sp. nov., isolated from human clinical specimens. IJSEM 49: 97 - 101 1999 ( DOI 10.1099/00207713-49-1-97 , PubMed 10028250 )
#39388	; Curators of the CIP;
#53788	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37658
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122315	Collection of Institut Pasteur ; Curators of the CIP; CIP 105896
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Ignavigranum ruoffiae (DSM 15695, ATCC 700630, CCUG 37658)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900110675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media