Name: Vibrio jasicida DSM 27061
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23341

Type strain:

Species: Vibrio jasicida

Culture col. no.: DSM 27061, JCM 16453, LMG 25398, TCFB 0772

Strain history: T. Sawabe 0772 <-- J. Carson.

NCBI tax ID(s): 1229494 (strain), 766224 (species)

SI-ID 398092

DSM 27061

Other strains from Vibrio jasicida

V. jasicida BFLP-10, DSM 23440, CECT 7692
V. jasicida JCM 16454
V. jasicida JCM 16455

Section

Vibrio jasicida DSM 27061 is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from packhorse lobster phyllosoma with luminous vibriosis.

Gram-negative
motile
rod-shaped
animal pathogen
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio jasicida**
	Full Scientific Name (LPSN)	Vibrio jasicida Yoshizawa et al. 2012

Synonym

Vibrio inhibens

Information on morphological and physiological properties Morphology

[Ref.: #29909]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #29909]	Cell length	1.25 µm

[Ref.: #29909]	Cell width	0.5 µm

[Ref.: #29909]	Cell shape	rod-shaped

[Ref.: #29909]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.75

[Ref.: #29909]

Pigment production

yes

Multimedia content

[Ref.: #19161]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19161]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #19161]

Culture medium growth

[Ref.: #19161]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19161]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19161]	growth	28 °C
[Ref.: #29909]	growth	10-37 °C
[Ref.: #29909]	optimum	31 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #19161]	Temperature range	mesophilic
[Ref.: #29909]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29909]			optimum	7.5
[Ref.: #29909]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29909]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.945

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29909]		NaCl		growth	0.5-8	%
[Ref.: #29909]		NaCl		optimum	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29909]	alanine ChEBI	+	carbon source
[Ref.: #29909]	cellobiose ChEBI	+	carbon source
[Ref.: #29909]	citrate ChEBI	+	carbon source
[Ref.: #29909]	esculin ChEBI	+	hydrolysis
[Ref.: #29909]	galactose ChEBI	+	carbon source
[Ref.: #29909]	gluconate ChEBI	+	carbon source
[Ref.: #29909]	glucosamine ChEBI	+	carbon source
[Ref.: #29909]	glucose ChEBI	+	carbon source
[Ref.: #29909]	glycerol ChEBI	+	carbon source
[Ref.: #29909]	lactate ChEBI	+	carbon source
[Ref.: #29909]	mannose ChEBI	+	carbon source
[Ref.: #29909]	nitrate ChEBI	+	reduction
[Ref.: #29909]	propionate ChEBI	+	carbon source
[Ref.: #29909]	serine ChEBI	+	carbon source
[Ref.: #29909]	succinate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29909]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29909]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #29909]	acid phosphatase	+	3.1.3.2
[Ref.: #29909]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29909]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29909]	catalase	+	1.11.1.6
[Ref.: #29909]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29909]	gelatinase	+
[Ref.: #29909]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19161]	Sample type/isolated from	packhorse lobster phyllosoma (larvae) with luminous vibriosis
[Ref.: #19161]	Country	New Zealand
[Ref.: #19161]	Country ISO 3 Code	NZL
[Ref.: #19161]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Rock lobster Jasus verreaxuxi phyllosoma with luminous vibriosis in New Zealand
[Ref.: #67770]	Host species	Jasus verreaxuxi
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Arthropoda	#Crustacea

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB562589 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	169
Soil Samples	4
Animal Samples	159
Plant Samples	13
Total Samples	345

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19161]	Pathogenicity (animal)	yes
[Ref.: #19161]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19161]	Vibrio jasicida gene for 16S rRNA, partial sequence, strain: TCFB 0772	AB562589	1400	ENA	1229494 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Vibrio jasicida CAIM 1864 = LMG 25398	GCA_000400365	scaffold	GenBank	1229494 tax ID
[Ref.: #66792]	Vibrio jasicida CAIM 1864 = LMG 25398	1229494.3	wgs	PATRIC	1229494 tax ID	*

[Ref.: #19161]	GC-content	45.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29909]	GC-content	45.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio jasicida CAIM 1864 = LMG 25398 CAIM 1864 = LMG 25398 NCBI: GCA_000400365.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio jasicida CAIM 1864 = LMG 25398 PATRIC: 1229494.3
[Ref.: #69480]	motile	yes	90.162	yes
[Ref.: #69480]	gram-positive	no	98.642	yes
[Ref.: #69480]	anaerobic	no	97.479	yes
[Ref.: #69480]	aerobic	yes	84.314	yes
[Ref.: #69480]	halophile	no	56.442	no
[Ref.: #69480]	spore-forming	no	93.703	no
[Ref.: #69480]	thermophile	no	99.61	yes
[Ref.: #69480]	glucose-util	yes	89.732	yes
[Ref.: #69480]	flagellated	yes	88.795	no
[Ref.: #69480]	glucose-ferment	yes	87.108	no

Availability in culture collections External links

[Ref.: #19161]

Culture collection no.

DSM 27061, JCM 16453, LMG 25398, TCFB 0772

[Ref.: #87558]

SI-ID 398092

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences.	Urbanczyk H, Ogura Y, Hayashi T	Int J Syst Evol Microbiol	10.1099/ijs.0.051110-0	2013	*
Phylogeny	Vibrio jasicida sp. nov., a member of the Harveyi clade, isolated from marine animals (packhorse lobster, abalone and Atlantic salmon).	Yoshizawa S, Tsuruya Y, Fukui Y, Sawabe T, Yokota A, Kogure K, Higgins M, Carson J, Thompson FL	Int J Syst Evol Microbiol	10.1099/ijs.0.025916-0	2011	*

References

#19161

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27061

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29909

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26281 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87558

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398092.1 )

#26281

IJSEM 1864 2012 ( DOI 10.1099/ijs.0.025916-0 , PubMed 21984666 )

* These data were automatically processed and therefore are not curated

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Vibrio jasicida CAIM 1864 = LMG 25398 CAIM 1864 = LMG 25398

Vibrio jasicida CAIM 1864 = LMG 25398

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