Name: Vibrio jasicida BFLP-10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130768

Type strain:

Species: Vibrio jasicida

Strain Designation: BFLP-10

Culture col. no.: DSM 23440, CECT 7692

Strain history: <- J. Pintado, Instituto de Investigaciones Marinas de Vigo (CSIC), Spain; BFLP-10 (Vibrio inhibens) <- J. L. Balcázar

NCBI tax ID(s): 766224 (species)

SI-ID 394933

CECT 7692, DSM 23440

Special Collections

DSMZ

Other strains from Vibrio jasicida

Section

When using BacDive for research please cite our paper

Vibrio jasicida BFLP-10 is a mesophilic animal pathogen that was isolated from faeces of wild long-snouted seahorses .

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio jasicida**
	Full Scientific Name (LPSN)	Vibrio jasicida Yoshizawa et al. 2012

Synonym

Vibrio inhibens

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %98.1
[Ref.: #125438]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21982]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21982]

Culture medium growth

[Ref.: #21982]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21982]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21982]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %96.4

[Ref.: #125439]

Ability of spore formation

no Confidence in %98.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21982]	Sample type/isolated from	faeces of wild long-snouted seahorses (Hippocampus guttulatus)
[Ref.: #21982]	Host species	Hippocampus guttulatus
[Ref.: #21982]	Geographic location (country and/or sea, region)	Galicia
[Ref.: #21982]	Country	Spain
[Ref.: #21982]	Country ISO 3 Code	ESP
[Ref.: #21982]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN687911 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	169
Soil Samples	4
Animal Samples	159
Plant Samples	13
Total Samples	345

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21982]	Pathogenicity (animal)	yes
[Ref.: #21982]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21982]	Vibrio inhibens partial 16S rRNA gene, type strain BFLP-10T	FN687911	1484	GenBank ENA	766224 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio jasicida CECT 7692	GCA_002930005	scaffold	GenBank ENA	766224 tax ID	*
[Ref.: #66792]	Vibrio jasicida CECT 7692	GCA_001625175	scaffold	GenBank ENA	766224 tax ID	*
[Ref.: #66792]	Vibrio inhibens strain CECT 7692	745713.3	wgs	PATRIC	766224 tax ID	*
[Ref.: #66792]	Vibrio jasicida strain CECT 7692	766224.20	wgs	PATRIC	766224 tax ID	*
[Ref.: #66792]	Vibrio jasicida CECT 7692	2917786041	draft	JGI IMG/M	766224 tax ID	*
[Ref.: #66792]	Vibrio jasicida CECT 7692	2814123241	draft	JGI IMG/M	766224 tax ID	*

[Ref.: #21982]

GC-content

45.6 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio jasicida CECT 7692 NCBI: GCA_002930005.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.442	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	66.756	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	83.205	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	89.932	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio jasicida CECT 7692 NCBI: GCA_002930005
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	69.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.1
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	96.4

Availability in culture collections External links

[Ref.: #21982]

Culture collection no.

DSM 23440, CECT 7692

[Ref.: #89265]

SI-ID 394933

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Vibrio sp. Strain V1B Isolated from the Gut Microflora of the Scallop Argopecten purpuratus.	Serrano W, Tarazona UI, Olaechea RM, Friedrich MW	Genome Announc	10.1128/genomeA.01130-17	2017	*
Phylogeny	Genomic evidence that Vibrio inhibens is a heterotypic synonym of Vibrio jasicida.	Urbanczyk Y, Ogura Y, Hayashi T, Urbanczyk H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001173	2016	*
Phylogeny	Vibrio inhibens sp. nov., a novel bacterium with inhibitory activity against Vibrio species.	Balcazar JL, Planas M, Pintado J	J Antibiot (Tokyo)	10.1038/ja.2012.22	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21982

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23440

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89265

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394933.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Vibrio jasicida CECT 7692

Vibrio jasicida CECT 7692

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