Name: Streptosporangium sandarakinum GW-12028
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23323

Type strain:

Species: Streptosporangium sandarakinum

Strain Designation: GW-12028

Culture col. no.: DSM 45763, LMG 27062, JCM 30998, CIP 110537

Strain history: CIP <- 2012, P. Kämfper, Giessen Univ., Giessen, Germany: strain GW-12028

NCBI tax ID(s): 1260955 (species)

SI-ID 380542

LMG 27062, DSM 45763, CIP 110537, JCM 30998

Special Collections

Section

Streptosporangium sandarakinum GW-12028 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

coccus-shaped
Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Streptosporangium*
	Species	**Streptosporangium sandarakinum**
	Full Scientific Name (LPSN)	Streptosporangium sandarakinum Kämpfer et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30959]	Gram stain	positive
[Ref.: #122413]	Gram stain	positive

[Ref.: #30959]	Cell shape	coccus-shaped
[Ref.: #122413]	Cell shape	rod-shaped

[Ref.: #30959]	Motility	no
[Ref.: #122413]	Motility	no

[Ref.: #69427]	Colony color	Coral red (3016)
[Ref.: #69427]	Cultivation medium used	ISP 2

[Ref.: #69427]	Colony color	Beige red (3012), light ivory (1015)
[Ref.: #69427]	Cultivation medium used	suter without tyrosine

[Ref.: #69427]	Colony color	Beige red (3012), daffodil yellow (1007), light ivory (1015)
[Ref.: #69427]	Cultivation medium used	suter with tyrosine

[Ref.: #69427]	Colony color	Pastel yellow (1034)
[Ref.: #69427]	Cultivation medium used	ISP 6

[Ref.: #69427]	Colony color	Salmon orange (2012)
[Ref.: #69427]	Cultivation medium used	ISP 3

[Ref.: #69427]	Colony color	Salmon orange (2012)
[Ref.: #69427]	Cultivation medium used	ISP 4

[Ref.: #69427]	Colony color	Salmon orange (2012)
[Ref.: #69427]	Cultivation medium used	ISP 5

[Ref.: #69427]	Colony color	Salmon orange (2012)
[Ref.: #69427]	Cultivation medium used	ISP 7

[Ref.: #30959]	Pigment production	yes
[Ref.: #69427]	Pigment production	no
[Ref.: #69427]	Pigment name	Melanin
[Ref.: #69427]	Pigment production	no
[Ref.: #69427]	Pigment name	soluble pigment

[Ref.: #69427]	Multicellular complex forming ability	yes
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Multicellular complex color	Pure white (9010)
[Ref.: #69427]	Medium Name (multicellularity)	ISP 2

[Ref.: #69427]	Multicellular complex forming ability	yes
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Multicellular complex color	Pure white (9010)
[Ref.: #69427]	Medium Name (multicellularity)	ISP 3

[Ref.: #69427]	Multicellular complex forming ability	no
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Medium Name (multicellularity)	ISP 4

[Ref.: #69427]	Multicellular complex forming ability	yes
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Multicellular complex color	Pure white (9010)
[Ref.: #69427]	Medium Name (multicellularity)	ISP 5

[Ref.: #69427]	Multicellular complex forming ability	no
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Medium Name (multicellularity)	ISP 6

[Ref.: #69427]	Multicellular complex forming ability	yes
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Multicellular complex color	Pure white (9010)
[Ref.: #69427]	Medium Name (multicellularity)	ISP 7

[Ref.: #69427]	Multicellular complex forming ability	no
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69427]	Multicellular complex forming ability	no
[Ref.: #69427]	Multicellular complex name	Aerial mycelium
[Ref.: #69427]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #19365]

Caption:

Medium 65 28°C

[Ref.: #19365]

Intellectual property rights:

[Ref.: #69427]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69427]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69427]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69427]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19365]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #19365]

Culture medium growth

[Ref.: #19365]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19365]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #19365]

Culture medium growth

[Ref.: #19365]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #37708]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #37708]

Culture medium growth

[Ref.: #37708]

Culture medium composition

expand / minimize

[Ref.: #19365]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19365]

Culture medium growth

[Ref.: #19365]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19365]

Culture medium composition

expand / minimize

[Ref.: #122413]

Culture medium

CIP Medium 57

[Ref.: #122413]

Culture medium growth

[Ref.: #122413]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #19365]	growth	28 °C
[Ref.: #30959]	growth	20-36 °C
[Ref.: #30959]	optimum	29 °C
[Ref.: #37708]	growth	25 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30959]			optimum	7.5
[Ref.: #30959]			growth	4.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30959]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %92.321

[Ref.: #30959]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.751
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30959]		NaCl		growth	0-4	%
[Ref.: #69427]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9₂), MK-9(H₄), MK-9(H₀)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30959]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #69427]	arabinose ChEBI	+	growth
[Ref.: #30959]	arabinose ChEBI	+	carbon source
[Ref.: #30959]	cellobiose ChEBI	+	carbon source
[Ref.: #69427]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30959]	fructose ChEBI	+	carbon source
[Ref.: #69427]	fructose ChEBI	+	growth
[Ref.: #30959]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30959]	glucose ChEBI	+	carbon source
[Ref.: #69427]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69427]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30959]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30959]	mannitol ChEBI	+	carbon source
[Ref.: #30959]	mannose ChEBI	+	carbon source
[Ref.: #69427]	mannose ChEBI	+	growth
[Ref.: #30959]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #30959]	putrescine ChEBI	+	carbon source
[Ref.: #69427]	raffinose ChEBI	-	growth
[Ref.: #69427]	rhamnose ChEBI	-	growth
[Ref.: #30959]	ribitol ChEBI	+	carbon source
[Ref.: #30959]	ribose ChEBI	+	carbon source
[Ref.: #69427]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30959]	trehalose ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30959]	xylose ChEBI	+	carbon source
[Ref.: #69427]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30959]	catalase	+	1.11.1.6
[Ref.: #30959]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #30959]	gelatinase	+
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #30959]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69427]	3920	+	-	+	+	-	-	+	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69427]	6104	not determinedn.d.	+	+	+/-	+	+	+	+/-	+/-	+	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19365]	Sample type/isolated from	soil
[Ref.: #19365]	Country	Germany
[Ref.: #19365]	Country ISO 3 Code	DEU
[Ref.: #19365]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil of unknown origin

[Ref.: #122413]	Sample type/isolated from	Environment, Soil
[Ref.: #122413]	Country	Germany
[Ref.: #122413]	Country ISO 3 Code	DEU
[Ref.: #122413]	Continent	Europe
[Ref.: #122413]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19365]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122413]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19365]	Streptosporangium sandarakinum strain GW-12028 16S ribosomal RNA gene, partial sequence	JX977118	1359	GenBank ENA	1260955 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptosporangium sandarakinum DSM 45763	GCA_013409935	contig	GenBank ENA	1260955 tax ID
[Ref.: #66792]	Streptosporangium sandarakinum strain DSM 45763	1260955.3	wgs	PATRIC	1260955 tax ID	*
[Ref.: #66792]	Streptosporangium sandarakinum DSM 45763	2852721695	draft	JGI IMG/M	1260955 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptosporangium sandarakinum strain DSM 45763 PATRIC: 1260955.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptosporangium sandarakinum strain DSM 45763 PATRIC: 1260955.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.099	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.384	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.751	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.321	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	84	yes

Availability in culture collections External links

[Ref.: #19365]

Culture collection no.

DSM 45763, LMG 27062, JCM 30998, CIP 110537

[Ref.: #87541]

SI-ID 380542

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptosporangium becharense sp. nov., an actinobacterium isolated from desert soil.	Chaabane Chaouch F, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001077	2016	*
Phylogeny	Streptosporangium sandarakinum sp. nov.	Kampfer P, Glaeser SP, Grun-Wollny I, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.048504-0	2012	*

References

#19365

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45763

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30959

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27289 (see below)

#37708 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69427

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87541

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380542.1 )

#122413 Collection of Institut Pasteur ; Curators of the CIP; CIP 110537

#27289

IJSEM 2484 2013 ( DOI 10.1099/ijs.0.048504-0 , PubMed 23243091 )

* These data were automatically processed and therefore are not curated

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Streptosporangium sandarakinum strain DSM 45763

Streptosporangium sandarakinum strain DSM 45763

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