Actinophytocola xinjiangensis (DSM 45854, CGMCC 4.4663, NBRC 106673)

Name: Actinophytocola xinjiangensis (DSM 45854, CGMCC 4.4663, NBRC 106673)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23222

Type strain

Strain Designation QAIII60

Culture col. no. DSM 45854 CGMCC 4.4663 NBRC 106673 QAIII60 JCM 18840

NCBI tax ID(s) 485602

Special Collections DSMZ JCM

History <- NBRC; NBRC 106673 <- CGMCC; CGMCC 4.4663 CGMCC 4.4663 <-- Y. Huang QAIII60.

Links

Actinophytocola xinjiangensis QAIII60 is a mesophilic prokaryote that was isolated from forest soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402589

NBRC 106673,DSM 45854

@ref 20215

Last LPSN update 2026-02-09 11:23:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Actinophytocola

Species Actinophytocola xinjiangensis

Full scientific name Actinophytocola xinjiangensis Guo et al. 2011

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19129	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19129	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.027

Observation

67770

Observationquinones: MK-10(H₂), MK-9(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19129	forest soil	Xinjiang, Kanas Nature Reserve	China	CHN	Asia
67770	Virgin forest soil of Kanas Nature Reserve	Xinjiang, north-west China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU274339 (>99% sequence identity) for Actinophytocola xinjiangensis from Microbeatlas

Aquatic Samples	23
Soil Samples	391
Animal Samples	109
Plant Samples	50
Total Samples	573

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19129	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM192121v1 assembly for Actinophytocola xinjiangensis CGMCC 4.4663	contig	GCA_001921215	485602.3	3001172821	485602	63.51
67770	ASM366402v1 assembly for Actinophytocola xinjiangensis CGMCC 4.4663	scaffold	GCA_003664025	485602.4	2681812964	485602	35.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19129	Actinophytocola xinjiangensis strain QAIII60 16S ribosomal RNA gene, partial sequence	EU274339	1481		485602

GC content

@ref	GC-content (mol%)	Method
19129	72.5
67770	72.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinophytocola xinjiangensis CGMCC 4.4663
NCBI: GCA_003664025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.40	no
125439	motility	BacteriaNetⓘ	yes	84.50	no
125439	gram_stain	BacteriaNetⓘ	variable	89.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinophytocola xinjiangensis strain CGMCC 4.4663
PATRIC: 485602.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.91	no
125438	anaerobic	anaerobicⓘ	no	95.12	no
125438	spore-forming	spore-formingⓘ	yes	83.22	no
125438	aerobic	aerobicⓘ	yes	91.03	no
125438	thermophilic	thermophileⓘ	no	92.00	yes
125438	flagellated	motile2+ⓘ	no	89.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Actinophytocola gossypii sp. nov. and Streptomyces gossypii sp. nov., two novel actinomycetes isolated from rhizosphere soil of cotton.	Ge X, Yang S, Zhen C, Liu W.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005832	2023
Phylogeny	Actinophytocola gilvus sp. nov., isolated from desert soil crusts, and emended description of the genus Actinophytocola Indananda et al. 2010.	Sun HM, Zhang T, Yu LY, Lu XX, Mou XZ, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijs.0.061051-0	2014
Phylogeny	Actinophytocola xanthii sp. nov., an actinomycete isolated from rhizosphere soil of the plant Xanthium sibiricum.	Wang W, Wang B, Meng H, Xing Z, Lai Q, Yuan L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001781	2017
Phylogeny	Actinophytocola sediminis sp. nov., an actinomycete isolated from a marine sediment.	Zhang DF, Jiang Z, Zhang XM, Yang LL, Tian XP, Long LJ, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.062638-0	2014
Phylogeny	Actinophytocola xinjiangensis sp. nov., isolated from virgin forest soil.	Guo X, Qiu D, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.027722-0	2011

References

#19129	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45854
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinophytocola xinjiangensis (DSM 45854, CGMCC 4.4663, NBRC 106673)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001921215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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