Name: Actinophytocola xinjiangensis QAIII60
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23222

Type strain:

Species: Actinophytocola xinjiangensis

Strain Designation: QAIII60

Culture col. no.: DSM 45854, CGMCC 4.4663, NBRC 106673, JCM 18840

Strain history: CGMCC 4.4663 <-- Y. Huang QAIII60.

NCBI tax ID(s): 485602 (species)

SI-ID 402589

DSM 45854

Special Collections

DSMZ
JCM

Section

Actinophytocola xinjiangensis QAIII60 is a spore-forming bacterium that was isolated from forest soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinophytocola*
	Species	**Actinophytocola xinjiangensis**
	Full Scientific Name (LPSN)	Actinophytocola xinjiangensis Guo et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19129]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #19129]

Culture medium growth

[Ref.: #19129]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19129]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19129]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.027

[Ref.: #67770]

Observation

quinones: MK-10(H₂), MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19129]	Sample type/isolated from	forest soil
[Ref.: #19129]	Geographic location (country and/or sea, region)	Xinjiang, Kanas Nature Reserve
[Ref.: #19129]	Country	China
[Ref.: #19129]	Country ISO 3 Code	CHN
[Ref.: #19129]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Virgin forest soil of Kanas Nature Reserve
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU274339 (>99% sequence identity) for Actinophytocola xinjiangensis from Microbeatlas

Aquatic Samples	23
Soil Samples	391
Animal Samples	109
Plant Samples	50
Total Samples	573

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19129]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19129]	Actinophytocola xinjiangensis strain QAIII60 16S ribosomal RNA gene, partial sequence	EU274339	1481	GenBank ENA	485602 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinophytocola xinjiangensis CGMCC 4.4663	GCA_001921215	contig	GenBank ENA	485602 tax ID
[Ref.: #67770]	Actinophytocola xinjiangensis CGMCC 4.4663	GCA_003664025	scaffold	GenBank ENA	485602 tax ID
[Ref.: #66792]	Actinophytocola xinjiangensis strain CGMCC 4.4663	485602.3	wgs	PATRIC	485602 tax ID	*
[Ref.: #66792]	Actinophytocola xinjiangensis strain CGMCC 4.4663	485602.4	wgs	PATRIC	485602 tax ID	*
[Ref.: #66792]	Actinophytocola xinjiangensis CGMCC 4.4663	2681812964	draft	JGI IMG/M	485602 tax ID	*

[Ref.: #19129]	GC-content	72.5 mol%
[Ref.: #67770]	GC-content	72.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinophytocola xinjiangensis strain CGMCC 4.4663 PATRIC: 485602.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	61	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinophytocola xinjiangensis strain CGMCC 4.4663 PATRIC: 485602.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.91	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.12	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	83.216	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.027	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.999	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.074	no

Availability in culture collections External links

[Ref.: #19129]

Culture collection no.

DSM 45854, CGMCC 4.4663, NBRC 106673, JCM 18840

[Ref.: #87449]

SI-ID 402589

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinophytocola gilvus sp. nov., isolated from desert soil crusts, and emended description of the genus Actinophytocola Indananda et al. 2010.	Sun HM, Zhang T, Yu LY, Lu XX, Mou XZ, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijs.0.061051-0	2014	*
Phylogeny	Actinophytocola xanthii sp. nov., an actinomycete isolated from rhizosphere soil of the plant Xanthium sibiricum.	Wang W, Wang B, Meng H, Xing Z, Lai Q, Yuan L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001781	2017	*
Phylogeny	Actinophytocola sediminis sp. nov., an actinomycete isolated from a marine sediment.	Zhang DF, Jiang Z, Zhang XM, Yang LL, Tian XP, Long LJ, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.062638-0	2014	*
Phylogeny	Actinophytocola xinjiangensis sp. nov., isolated from virgin forest soil.	Guo X, Qiu D, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.027722-0	2011	*

References

#19129

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45854

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87449

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402589.1 )

* These data were automatically processed and therefore are not curated

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Actinophytocola xinjiangensis strain CGMCC 4.4663

Actinophytocola xinjiangensis strain CGMCC 4.4663

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