Name: Brevundimonas halotolerans DSM 24448
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2322

Type strain:

Species: Brevundimonas halotolerans

Culture col. no.: DSM 24448, CCUG 58273, LMG 25346, MCS 24

Strain history: <- CCUG <- W. R. Abraham, HZI Braunschweig <- J. Smit, Univ. British Columbia, Vancouver, Canada

NCBI tax ID(s): 69670 (species)

SI-ID 363070

LMG 25346, CCUG 58273, DSM 24448

Other strains from Brevundimonas halotolerans

B. halotolerans CCUG 57882, LMG 25260

Section

Brevundimonas halotolerans DSM 24448 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from brackish water .

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Brevundimonas*
	Species	**Brevundimonas halotolerans**
	Full Scientific Name (LPSN)	Brevundimonas halotolerans Abraham et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29604]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #29604]	Cell shape	rod-shaped

[Ref.: #61646]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17678]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17678]

Culture medium growth

[Ref.: #17678]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17678]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17678]	growth	28 °C
[Ref.: #29604]	growth	10-40 °C
[Ref.: #29604]	optimum	30 °C
[Ref.: #61646]	growth	30-37 °C

[Ref.: #17678]	Temperature range	mesophilic
[Ref.: #29604]	Temperature range	mesophilic
[Ref.: #61646]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29604]	Oxygen tolerance	aerobe
[Ref.: #61646]	Oxygen tolerance	aerobe

[Ref.: #29604]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29604]		nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29604]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17678]	Sample type/isolated from	brackish water (creek flowing into saltwater)
[Ref.: #17678]	Geographic location (country and/or sea, region)	Washington, Seattle, Carkeek Park
[Ref.: #17678]	Country	USA
[Ref.: #17678]	Country ISO 3 Code	USA
[Ref.: #17678]	Continent	North America

[Ref.: #61646]	Sample type/isolated from	Water,brackish
[Ref.: #61646]	Geographic location (country and/or sea, region)	Washington, Seattle, Carkeek Park
[Ref.: #61646]	Country	USA
[Ref.: #61646]	Country ISO 3 Code	USA
[Ref.: #61646]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M83810 (>99% sequence identity) for Brevundimonas halotolerans from Microbeatlas

Aquatic Samples	404
Soil Samples	53
Animal Samples	40
Plant Samples	14
Total Samples	511

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17678]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17678]	Caulobacter sp. MCS24 16S ribosomal RNA gene, complete sequence	M83810	1292	ENA	69670 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevundimonas halotolerans DSM 24448	GCA_014199165	contig	GenBank	69670 tax ID	*
[Ref.: #66792]	Brevundimonas halotolerans strain DSM 24448	69670.5	wgs	PATRIC	69670 tax ID	*
[Ref.: #66792]	Brevundimonas halotolerans DSM 24448	2828354178	draft	JGI IMG/M	69670 tax ID	*

[Ref.: #29604]

GC-content

64.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brevundimonas halotolerans strain DSM 24448 PATRIC: 69670.3
[Ref.: #69481]	spore-forming	no	77	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevundimonas halotolerans strain DSM 24448 PATRIC: 69670.5
[Ref.: #69480]	gram-positive	no	98.364	no
[Ref.: #69480]	anaerobic	no	97.6	no
[Ref.: #69480]	halophile	no	90.022	no
[Ref.: #69480]	spore-forming	no	97.22	no
[Ref.: #69480]	glucose-util	yes	67.799	no
[Ref.: #69480]	thermophile	no	98.397	yes
[Ref.: #69480]	flagellated	no	78.933	no
[Ref.: #69480]	motile	yes	86.411	no
[Ref.: #69480]	aerobic	yes	88.781	yes
[Ref.: #69480]	glucose-ferment	no	90.875	no

Availability in culture collections External links

[Ref.: #17678]

Culture collection no.

DSM 24448, CCUG 58273, LMG 25346, MCS 24

[Ref.: #71879]

SI-ID 363070

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevundimonas lutea sp. nov., isolated from lake sediment.	Qu JH, Fu YH, Li XD, Li HF, Tian HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003330	2019	*
Phylogeny	Brevundimonas halotolerans sp. nov., Brevundimonas poindexterae sp. nov. and Brevundimonas staleyi sp. nov., prosthecate bacteria from aquatic habitats.	Abraham WR, Estrela AB, Nikitin DI, Smit J, Vancanneyt M	Int J Syst Evol Microbiol	10.1099/ijs.0.016832-0	2009	*

References

#17678

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24448

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29604

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25994 (see below)

#61646 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58273

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71879

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363070.1 )

#25994

IJSEM 1837 2010 ( DOI 10.1099/ijs.0.016832-0 , PubMed 19767362 )

* These data were automatically processed and therefore are not curated

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Brevundimonas halotolerans strain DSM 24448

Brevundimonas halotolerans strain DSM 24448

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