Name: Brevundimonas basaltis J22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2321

Type strain:

Species: Brevundimonas basaltis

Strain Designation: J22

Culture col. no.: DSM 25335, JCM 15911, KCTC 22177

Strain history: J.-W. Bae J22.

NCBI tax ID(s): 472166 (species)

SI-ID 399511

DSM 25335

Section

Brevundimonas basaltis J22 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from black sand.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Brevundimonas*
	Species	**Brevundimonas basaltis**
	Full Scientific Name (LPSN)	Brevundimonas basaltis Choi et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29461]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #29461]	Cell shape	rod-shaped

[Ref.: #29461]	Motility	yes

[Ref.: #29461]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18004]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #18004]

Culture medium growth

[Ref.: #18004]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18004]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18004]	growth	28 °C
[Ref.: #29461]	growth	10-42 °C
[Ref.: #29461]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #18004]	Temperature range	mesophilic
[Ref.: #29461]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29461]			optimum	7.5
[Ref.: #29461]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29461]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29461]		NaCl		growth	0-4	%

[Ref.: #29461]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29461]	aspartate ChEBI	+	carbon source
[Ref.: #29461]	dextrin ChEBI	+	carbon source
[Ref.: #29461]	esculin ChEBI	+	hydrolysis

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29461]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18004]	Sample type/isolated from	black sand
[Ref.: #18004]	Geographic location (country and/or sea, region)	Jeju Island, Soesoggak
[Ref.: #18004]	Country	Republic of Korea
[Ref.: #18004]	Country ISO 3 Code	KOR
[Ref.: #18004]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Black sand from Soesoggak Beach on Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18004]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18004]	Brevundimonas basaltis strain J22 16S ribosomal RNA gene, partial sequence	EU143355	1339	ENA	472166 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevundimonas basaltis DSM 25335	GCA_014202075	contig	GenBank	472166 tax ID	*
[Ref.: #66792]	Brevundimonas basaltis strain DSM 25335	472166.3	wgs	PATRIC	472166 tax ID	*
[Ref.: #66792]	Brevundimonas basaltis DSM 25335	2861358767	draft	JGI IMG/M	472166 tax ID	*

[Ref.: #18004]	GC-content	66.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29461]	GC-content	66.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brevundimonas basaltis strain DSM 25335 PATRIC: 472166.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevundimonas basaltis strain DSM 25335 PATRIC: 472166.3
[Ref.: #69480]	gram-positive	no	98.262	no
[Ref.: #69480]	anaerobic	no	97.259	yes
[Ref.: #69480]	halophile	no	92.527	no
[Ref.: #69480]	spore-forming	no	94.902	no
[Ref.: #69480]	glucose-util	yes	77.145	no
[Ref.: #69480]	aerobic	yes	84.425	no
[Ref.: #69480]	flagellated	no	80.184	no
[Ref.: #69480]	thermophile	no	98.712	yes
[Ref.: #69480]	motile	yes	90.022	yes
[Ref.: #69480]	glucose-ferment	no	91.726	no

Availability in culture collections External links

[Ref.: #18004]

Culture collection no.

DSM 25335, JCM 15911, KCTC 22177

[Ref.: #71878]

SI-ID 399511

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevundimonas basaltis sp. nov., isolated from black sand.	Choi JH, Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.013557-0	2009	*

References

#18004

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25335

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29461

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25865 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71878

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399511.1 )

#25865

IJSEM 1488 2010 ( DOI 10.1099/ijs.0.013557-0 , PubMed 19671711 )

* These data were automatically processed and therefore are not curated

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Brevundimonas basaltis strain DSM 25335

Brevundimonas basaltis strain DSM 25335

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