Name: Saccharomonospora amisosensis DS3030
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23219

Type strain:

Species: Saccharomonospora amisosensis

Strain Designation: DS3030

Culture col. no.: DSM 45685, KCTC 29069, NRRL B-24885

Strain history: <- Nevzat Sahin, Ondokuz Mayis Univ., Turkey

NCBI tax ID(s): 1128677 (species)

SI-ID 405693

DSM 45685

Section

Saccharomonospora amisosensis DS3030 is an aerobe, spore-forming, mesophilic bacterium that was isolated from deep marine sediment.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharomonospora*
	Species	**Saccharomonospora amisosensis**
	Full Scientific Name (LPSN)	Saccharomonospora amisosensis Veyisoglu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31078]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31078]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.74

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18912]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18912]

Culture medium growth

[Ref.: #18912]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18912]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18912]	growth	28 °C
[Ref.: #31078]	growth	28-45 °C
[Ref.: #31078]	optimum	30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #18912]	Temperature range	mesophilic
[Ref.: #31078]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31078]			optimum	7
[Ref.: #31078]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31078]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31078]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31078]		NaCl		growth	0-10	%

[Ref.: #67771]

Observation

quinones: MK-9(H4)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31078]	cellobiose ChEBI	+	carbon source
[Ref.: #31078]	dextrin ChEBI	+	carbon source
[Ref.: #31078]	esculin ChEBI	+	hydrolysis
[Ref.: #31078]	galactose ChEBI	+	carbon source
[Ref.: #31078]	lactose ChEBI	+	carbon source
[Ref.: #31078]	mannitol ChEBI	+	carbon source
[Ref.: #31078]	mannose ChEBI	+	carbon source
[Ref.: #31078]	phenylalanine ChEBI	+	carbon source
[Ref.: #31078]	proline ChEBI	+	carbon source
[Ref.: #31078]	rhamnose ChEBI	+	carbon source
[Ref.: #31078]	serine ChEBI	+	carbon source
[Ref.: #31078]	threonine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31078]	acid phosphatase	+	3.1.3.2
[Ref.: #31078]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31078]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18912]	Sample type/isolated from	deep marine sediment
[Ref.: #18912]	Geographic location (country and/or sea, region)	Karadeniz, offshore of the Melet River (41° 00.353' N 37° 57.489' E) at a depth of 60 m
[Ref.: #18912]	Country	Turkey
[Ref.: #18912]	Country ISO 3 Code	TUR
[Ref.: #18912]	Continent	Asia
[Ref.: #18912]	Geographic location	41.0059°/37.9581°

[Ref.: #67771]	Sample type/isolated from	From marine sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Karadeniz
[Ref.: #67771]	Country	Turkey
[Ref.: #67771]	Country ISO 3 Code	TUR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN989292 (>99% sequence identity) for Saccharomonospora from Microbeatlas

Aquatic Samples	1
Soil Samples	9
Animal Samples
Plant Samples
Total Samples	10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18912]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18912]	Saccharomonospora amisosensis strain DS3030 16S ribosomal RNA gene, partial sequence	JN989292	1477	ENA	1128677 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharomonospora amisosensis DSM 45685	GCA_011761185	contig	GenBank	1128677 tax ID	*
[Ref.: #66792]	Saccharomonospora amisosensis strain DSM 45685	1128677.3	wgs	PATRIC	1128677 tax ID	*
[Ref.: #66792]	Saccharomonospora amisosensis DSM 45685	2821258180	draft	JGI IMG/M	1128677 tax ID	*

[Ref.: #18912]	GC-content	68.9 mol%	fluorimetric
[Ref.: #31078]	GC-content	68.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharomonospora amisosensis strain DSM 45685 PATRIC: 1128677.3
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharomonospora amisosensis strain DSM 45685 PATRIC: 1128677.3
[Ref.: #69480]	motile	no	92.132	yes
[Ref.: #69480]	flagellated	no	97.783	yes
[Ref.: #69480]	gram-positive	yes	90.106	yes
[Ref.: #69480]	anaerobic	no	98.729	yes
[Ref.: #69480]	halophile	yes	59.03	no
[Ref.: #69480]	spore-forming	yes	64.06	no
[Ref.: #69480]	glucose-util	yes	86.132	no
[Ref.: #69480]	aerobic	yes	90.465	yes
[Ref.: #69480]	thermophile	no	90.819	yes
[Ref.: #69480]	glucose-ferment	no	94.245	no

Availability in culture collections External links

[Ref.: #18912]

Culture collection no.

DSM 45685, KCTC 29069, NRRL B-24885

[Ref.: #87447]

SI-ID 405693

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharomonospora amisosensis sp. nov., isolated from deep marine sediment.	Veyisoglu A, Sazak A, Cetin D, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.051516-0	2013	*

References

#18912

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45685

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31078

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27407 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87447

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405693.1 )

#27407

IJSEM 3782 2013 ( DOI 10.1099/ijs.0.051516-0 , PubMed 23667139 )

* These data were automatically processed and therefore are not curated

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Saccharomonospora amisosensis strain DSM 45685

Saccharomonospora amisosensis strain DSM 45685

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