Kurthia massiliensis (DSM 24639, CSUR P141, JC30)

Name: Kurthia massiliensis (DSM 24639, CSUR P141, JC30)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23194

Type strain

Strain Designation JC30

Culture col. no. DSM 24639 CSUR P141 JC30

NCBI tax ID(s) 1033739

Special Collections DSMZ Cadoret human gut

Links

Kurthia massiliensis JC30 is a mesophilic prokaryote that was isolated from human stool.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 398340

DSM 24639

@ref 20215

Last LPSN update 2025-12-16 09:52:36

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Kurthia

Species Kurthia massiliensis

Full scientific name Kurthia massiliensis Roux et al. 2013

BacDive ID	Other strains from **Kurthia massiliensis** (1)	Type strain
23195	K. massiliensis JC31, DSM 24640

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19267	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19267	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.5

Murein

@ref	Murein short key	Type
19267	A11.33	A4alpha L-Lys-D-Glu

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19267	human stool	Dielmo	Senegal	SEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence JF824795 (>99% sequence identity) for Kurthia massiliensis subclade from Microbeatlas

Aquatic Samples	84
Soil Samples	77
Animal Samples	2328
Plant Samples	10
Total Samples	2499

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19267	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM28555v1 assembly for Kurthia massiliensis JC30	scaffold	GCA_000285555	1033739.3	2547132137	1033739	50.03

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19267	Kurthia massiliensis 16S ribosomal RNA gene, partial sequence	JF824795	1471		1033739

GC content

19267

GC-content (mol%)39.26

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kurthia massiliensis JC30
NCBI: GCA_000285555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	52.80	no
125439	motility	BacteriaNetⓘ	yes	56.20	no
125439	gram_stain	BacteriaNetⓘ	variable	84.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kurthia massiliensis JC30
NCBI: GCA_000285555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.67	no
125438	anaerobic	anaerobicⓘ	no	93.56	no
125438	aerobic	aerobicⓘ	yes	74.69	no
125438	spore-forming	spore-formingⓘ	yes	66.27	no
125438	thermophilic	thermophileⓘ	no	89.58	yes
125438	flagellated	motile2+ⓘ	yes	77.72	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Transcriptome	Multilocus sequence analysis of the genus Kurthia, and a description of Kurthia populi sp. nov.	Fang W, Guo MW, Ruan ZY, Xue H, Wang LF, Tian GZ, Piao CG, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000494	2015
Phylogeny	Kurthia huakuii sp. nov., isolated from biogas slurry, and emended description of the genus Kurthia.	Ruan Z, Wang Y, Song J, Jiang S, Wang H, Li Y, Zhao B, Jiang R, Zhao B	Int J Syst Evol Microbiol	10.1099/ijs.0.056044-0	2013

References

#19267	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24639
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kurthia massiliensis (DSM 24639, CSUR P141, JC30)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000285555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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