Strain identifier

BacDive ID: 23194

Type strain: Yes

Species: Kurthia massiliensis

Strain Designation: JC30

Strain history: <- V. Roux, Timone Hospital, Marseille, France; JC30 <- J.-C. Lagier

NCBI tax ID(s): 1033739 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 19267

BacDive-ID: 23194

DSM-Number: 24639

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Kurthia massiliensis JC30 is a mesophilic, motile bacterium that was isolated from human stool.

NCBI tax id

  • NCBI tax id: 1033739
  • Matching level: species

strain history

  • @ref: 19267
  • history: <- V. Roux, Timone Hospital, Marseille, France; JC30 <- J.-C. Lagier

doi: 10.13145/bacdive23194.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Kurthia
  • species: Kurthia massiliensis
  • full scientific name: Kurthia massiliensis Roux et al. 2013

@ref: 19267

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Kurthia

species: Kurthia massiliensis

full scientific name: Kurthia massiliensis Roux et al. 2013

strain designation: JC30

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes92.896
69480100positive

Culture and growth conditions

culture medium

  • @ref: 19267
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 19267
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 90.125

murein

  • @ref: 19267
  • murein short key: A11.33
  • type: A4alpha L-Lys-D-Glu

Isolation, sampling and environmental information

isolation

  • @ref: 19267
  • sample type: human stool
  • geographic location: Dielmo
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_5463.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_393;97_443;98_4080;99_5463&stattab=map
  • Last taxonomy: Kurthia massiliensis subclade
  • 16S sequence: JF824795
  • Sequence Identity:
  • Total samples: 2499
  • soil counts: 77
  • aquatic counts: 84
  • animal counts: 2328
  • plant counts: 10

Safety information

risk assessment

  • @ref: 19267
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19267
  • description: Kurthia massiliensis 16S ribosomal RNA gene, partial sequence
  • accession: JF824795
  • length: 1471
  • database: ena
  • NCBI tax ID: 1033739

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kurthia massiliensis JC30GCA_000285555scaffoldncbi1033739
66792Kurthia massiliensis JC302547132137draftimg1033739

GC content

  • @ref: 19267
  • GC-content: 39.26

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes74no
motileyes84.783no
flagellatedyes70.07no
gram-positiveyes91.764no
anaerobicno97.514no
aerobicyes87.435no
halophileno77.737no
spore-formingyes84.746no
thermophileno91.284yes
glucose-utilyes85.165no
glucose-fermentno84.406no

External links

@ref: 19267

culture collection no.: DSM 24639, CSUR P141

straininfo link

  • @ref: 87425
  • straininfo: 398340

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24108326Kurthia huakuii sp. nov., isolated from biogas slurry, and emended description of the genus Kurthia.Ruan Z, Wang Y, Song J, Jiang S, Wang H, Li Y, Zhao B, Jiang R, Zhao BInt J Syst Evol Microbiol10.1099/ijs.0.056044-02013Bacterial Typing Techniques, Base Composition, Biofuels/*microbiology, Bioreactors/microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Transcriptome28875926Multilocus sequence analysis of the genus Kurthia, and a description of Kurthia populi sp. nov.Fang W, Guo MW, Ruan ZY, Xue H, Wang LF, Tian GZ, Piao CG, Li YInt J Syst Evol Microbiol10.1099/ijsem.0.0004942015Phylogeny

Reference

@idauthorscataloguedoi/urltitle
19267Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24639)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24639
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
87425Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398340.1StrainInfo: A central database for resolving microbial strain identifiers