Strain identifier
BacDive ID: 23194
Type strain:
Species: Kurthia massiliensis
Strain Designation: JC30
Strain history: <- V. Roux, Timone Hospital, Marseille, France; JC30 <- J.-C. Lagier
NCBI tax ID(s): 1033739 (species)
General
@ref: 19267
BacDive-ID: 23194
DSM-Number: 24639
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Kurthia massiliensis JC30 is a mesophilic, motile bacterium that was isolated from human stool.
NCBI tax id
- NCBI tax id: 1033739
- Matching level: species
strain history
- @ref: 19267
- history: <- V. Roux, Timone Hospital, Marseille, France; JC30 <- J.-C. Lagier
doi: 10.13145/bacdive23194.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Kurthia
- species: Kurthia massiliensis
- full scientific name: Kurthia massiliensis Roux et al. 2013
@ref: 19267
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Kurthia
species: Kurthia massiliensis
full scientific name: Kurthia massiliensis Roux et al. 2013
strain designation: JC30
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 92.896 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 19267
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 19267
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.125
murein
- @ref: 19267
- murein short key: A11.33
- type: A4alpha L-Lys-D-Glu
Isolation, sampling and environmental information
isolation
- @ref: 19267
- sample type: human stool
- geographic location: Dielmo
- country: Senegal
- origin.country: SEN
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Human |
taxonmaps
- @ref: 69479
- File name: preview.99_5463.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_393;97_443;98_4080;99_5463&stattab=map
- Last taxonomy: Kurthia massiliensis subclade
- 16S sequence: JF824795
- Sequence Identity:
- Total samples: 2499
- soil counts: 77
- aquatic counts: 84
- animal counts: 2328
- plant counts: 10
Safety information
risk assessment
- @ref: 19267
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19267
- description: Kurthia massiliensis 16S ribosomal RNA gene, partial sequence
- accession: JF824795
- length: 1471
- database: ena
- NCBI tax ID: 1033739
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Kurthia massiliensis JC30 | GCA_000285555 | scaffold | ncbi | 1033739 |
66792 | Kurthia massiliensis JC30 | 2547132137 | draft | img | 1033739 |
GC content
- @ref: 19267
- GC-content: 39.26
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 74 | no |
motile | yes | 84.783 | no |
flagellated | yes | 70.07 | no |
gram-positive | yes | 91.764 | no |
anaerobic | no | 97.514 | no |
aerobic | yes | 87.435 | no |
halophile | no | 77.737 | no |
spore-forming | yes | 84.746 | no |
thermophile | no | 91.284 | yes |
glucose-util | yes | 85.165 | no |
glucose-ferment | no | 84.406 | no |
External links
@ref: 19267
culture collection no.: DSM 24639, CSUR P141
straininfo link
- @ref: 87425
- straininfo: 398340
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24108326 | Kurthia huakuii sp. nov., isolated from biogas slurry, and emended description of the genus Kurthia. | Ruan Z, Wang Y, Song J, Jiang S, Wang H, Li Y, Zhao B, Jiang R, Zhao B | Int J Syst Evol Microbiol | 10.1099/ijs.0.056044-0 | 2013 | Bacterial Typing Techniques, Base Composition, Biofuels/*microbiology, Bioreactors/microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Transcriptome | 28875926 | Multilocus sequence analysis of the genus Kurthia, and a description of Kurthia populi sp. nov. | Fang W, Guo MW, Ruan ZY, Xue H, Wang LF, Tian GZ, Piao CG, Li Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000494 | 2015 | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
19267 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24639) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24639 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
87425 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398340.1 | StrainInfo: A central database for resolving microbial strain identifiers |