Name: Kribbella endophytica DSM 23718
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23163

Type strain:

Species: Kribbella endophytica

Culture col. no.: DSM 23718, JCM 30548, NRRL B-24812, PIP 118

Strain history: DSM 23718 <-- C. M. M. Franco; Flinders Univ., Australia; PIP 118.

NCBI tax ID(s): 913948 (species)

SI-ID 404760

DSM 23718

Section

Kribbella endophytica DSM 23718 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from surface sterilized leaf of Pittosporum angustifolium, a native apricot tree.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Kribbellaceae*
	Genus	*Kribbella*
	Species	**Kribbella endophytica**
	Full Scientific Name (LPSN)	Kribbella endophytica Kaewkla and Franco 2013

Information on morphological and physiological properties Morphology

[Ref.: #30657]	Gram stain	positive

[Ref.: #30657]	Cell length	2.5 µm

[Ref.: #30657]	Cell width	0.35 µm

[Ref.: #30657]	Cell shape	rod-shaped

[Ref.: #30657]	Motility	no

[Ref.: #69312]	Colony color	Beige (1001), Ivory (1014)
[Ref.: #69312]	Cultivation medium used	ISP 6

[Ref.: #69312]	Colony color	Beige (1001)
[Ref.: #69312]	Cultivation medium used	suter with tyrosine

[Ref.: #69312]	Colony color	Beige (1001)
[Ref.: #69312]	Cultivation medium used	suter without tyrosine

[Ref.: #69312]	Colony color	Beige (1001)
[Ref.: #69312]	Cultivation medium used	ISP 3

[Ref.: #69312]	Colony color	Beige (1001)
[Ref.: #69312]	Cultivation medium used	ISP 4

[Ref.: #69312]	Colony color	Beige (1001)
[Ref.: #69312]	Cultivation medium used	ISP 5

[Ref.: #69312]	Colony color	Beige (1001)
[Ref.: #69312]	Cultivation medium used	ISP 7

[Ref.: #69312]	Colony color	Sand yellow (1002)
[Ref.: #69312]	Cultivation medium used	ISP 2

[Ref.: #30657]	Pigment production	no
[Ref.: #69312]	Pigment production	no
[Ref.: #69312]	Pigment name	Melanin
[Ref.: #69312]	Pigment production	no
[Ref.: #69312]	Pigment name	soluble pigment

[Ref.: #69312]	Multicellular complex forming ability	yes
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Multicellular complex color	Signal white (9003)
[Ref.: #69312]	Medium Name (multicellularity)	ISP 2

[Ref.: #69312]	Multicellular complex forming ability	yes
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Multicellular complex color	Signal white (9003)
[Ref.: #69312]	Medium Name (multicellularity)	ISP 3

[Ref.: #69312]	Multicellular complex forming ability	yes
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Multicellular complex color	Signal white (9003)
[Ref.: #69312]	Medium Name (multicellularity)	ISP 4

[Ref.: #69312]	Multicellular complex forming ability	yes
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Multicellular complex color	Signal white (9003)
[Ref.: #69312]	Medium Name (multicellularity)	ISP 5

[Ref.: #69312]	Multicellular complex forming ability	no
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Medium Name (multicellularity)	ISP 6

[Ref.: #69312]	Multicellular complex forming ability	yes
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Multicellular complex color	Traffic white (9016)
[Ref.: #69312]	Medium Name (multicellularity)	ISP 7

[Ref.: #69312]	Multicellular complex forming ability	yes
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Multicellular complex color	Cream (9001)
[Ref.: #69312]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69312]	Multicellular complex forming ability	yes
[Ref.: #69312]	Multicellular complex name	Aerial mycelium
[Ref.: #69312]	Multicellular complex color	Cream (9001)
[Ref.: #69312]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69312]

Caption:

(ISP6, ISP7)

[Ref.: #69312]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69312]

Caption:

(ISP6, ISP7)

[Ref.: #69312]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19295]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #19295]

Culture medium growth

[Ref.: #19295]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19295]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #19295]

Culture medium growth

[Ref.: #19295]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19295]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19295]

Culture medium growth

[Ref.: #19295]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19295]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19295]	growth	28 °C
[Ref.: #30657]	growth	15-27 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #19295]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30657]			optimum	7.5
[Ref.: #30657]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30657]

Oxygen tolerance

aerobe

[Ref.: #30657]

Ability of spore formation

yes

	Salt		Salt conc.
[Ref.: #30657]	NaCl	growth	0-3	%
[Ref.: #30657]	NaCl	optimum	1	%
[Ref.: #69312]	NaCl	growth	0-10	%

[Ref.: #30657]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₂), MK-9(H₀)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69312]	arabinose ChEBI	+	growth
[Ref.: #69312]	cellulose ChEBI	+	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30657]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69312]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69312]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69312]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69312]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69312]	raffinose ChEBI	+	growth
[Ref.: #69312]	rhamnose ChEBI	+	growth
[Ref.: #69312]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69312]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30657]	catalase	+	1.11.1.6
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #30657]	gelatinase	+
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #30657]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69312]	3805	-	+	+	+	-	+	+	+	+	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69312]	5989	not determinedn.d.	+	+	+/-	+	+	+/-	+/-	+	+	+	+	+	+	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19295]	Sample type/isolated from	surface sterilized leaf of Pittosporum angustifolium, a native apricot tree
[Ref.: #19295]	Host species	Pittosporum angustifolium
[Ref.: #19295]	Geographic location (country and/or sea, region)	Adelaide, Flinders University's Bedford Park campus
[Ref.: #19295]	Country	Australia
[Ref.: #19295]	Country ISO 3 Code	AUS
[Ref.: #19295]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Leaf of a native apricot tree (Pittosporum angustifolium) on the campus of Flinders Univ.
[Ref.: #67770]	Host species	Pittosporum angustifolium
[Ref.: #67770]	Geographic location (country and/or sea, region)	Adelaide, South Australia
[Ref.: #67770]	Country	Australia
[Ref.: #67770]	Country ISO 3 Code	AUS
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ396152 (>99% sequence identity) for Kribbella from Microbeatlas

Aquatic Samples	33
Soil Samples	1454
Animal Samples	51
Plant Samples	460
Total Samples	1998

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19295]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19295]	Kribbella endophytica 16S ribosomal RNA gene, partial sequence	HQ396152	1421	ENA	913948 tax ID

[Ref.: #19295]	GC-content	67.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30657]	GC-content	67.4 mol%

Availability in culture collections External links

[Ref.: #19295]

Culture collection no.

DSM 23718, JCM 30548, NRRL B-24812, PIP 118

[Ref.: #87397]

SI-ID 404760

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Kribbella italica sp. nov., isolated from a Roman catacomb.	Everest GJ, Curtis SM, De Leo F, Urzi C, Meyers PR	Int J Syst Evol Microbiol	10.1099/ijs.0.070672-0	2014	*
Phylogeny	Kribbella endophytica sp. nov., an endophytic actinobacterium isolated from the surface-sterilized leaf of a native apricot tree.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.041343-0	2012	*

References

#19295

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23718

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30657

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26988 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69312

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87397

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404760.1 )

#26988

IJSEM 1249 2013 ( DOI 10.1099/ijs.0.041343-0 , PubMed 22771686 )

* These data were automatically processed and therefore are not curated

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