Name: Aeromicrobium massiliense JC14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23162

Type strain:

Species: Aeromicrobium massiliense

Strain Designation: JC14

Culture col. no.: DSM 25782, CSUR P158, JCM 30543

Strain history: DSM 25782 <-- J.-C. Lagier; Fac. Med., Aix-Marseille Univ., France; JC14.

NCBI tax ID(s): 1464554 (species)

SI-ID 405269

DSM 25782

Special Collections

Section

Aeromicrobium massiliense JC14 is a Gram-positive bacterium that was isolated from human feces from a healthy 16-year-old male volunteer patient.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Aeromicrobium*
	Species	**Aeromicrobium massiliense**
	Full Scientific Name (LPSN)	Aeromicrobium massiliense Ramasamy et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19271]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #19271]

Culture medium growth

[Ref.: #19271]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19271]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #19271]

Culture medium growth

[Ref.: #19271]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #19271]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19271]	Sample type/isolated from	human feces from a healthy 16-year-old male volunteer patient
[Ref.: #19271]	Country	Senegal
[Ref.: #19271]	Country ISO 3 Code	SEN
[Ref.: #19271]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Stool of a healthy Senegalese patient
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Human	#Male
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF824798 (>99% sequence identity) for Aeromicrobium massiliense subclade from Microbeatlas

Aquatic Samples	16
Soil Samples	140
Animal Samples	64
Plant Samples	112
Total Samples	332

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19271]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19271]	Aeromicrobium massiliense JC14 16S ribosomal RNA gene, partial sequence	JF824798	1468	GenBank ENA	1033730 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeromicrobium massiliense JC14 type strain:LMG 18890	GCA_000285435	contig	GenBank ENA	1033730 tax ID
[Ref.: #67770]	Aeromicrobium massiliense JC14	GCA_000312105	scaffold	GenBank ENA	1033730 tax ID
[Ref.: #66792]	Aeromicrobium massiliense JC14	1033730.6	wgs	PATRIC	1033730 tax ID	*
[Ref.: #66792]	Aeromicrobium massiliense JC14	2636416159	draft	JGI IMG/M	1033730 tax ID	*

[Ref.: #19271]	GC-content	77.32 mol%	sequence analysis
[Ref.: #67770]	GC-content	72.49 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeromicrobium massiliense JC14 PATRIC: 1033730.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.567	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.475	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	57.66	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.887	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.6	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	64.5	no

Availability in culture collections External links

[Ref.: #19271]

Culture collection no.

DSM 25782, CSUR P158, JCM 30543

[Ref.: #87396]

SI-ID 405269

References

#19271

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25782

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87396

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405269.1 )

* These data were automatically processed and therefore are not curated

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