Name: Acinetobacter septicus AK001
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23129

Type strain:

Species: Acinetobacter septicus

Strain Designation: AK001

Culture col. no.: DSM 19415, CIP 110587, CCUG 56015, CIP 110473, ANC 3649

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain ANC 3649 <- CCUG <- Acinetobacter septicus: strain AK001

NCBI tax ID(s): 465797 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Acinetobacter septicus AK001 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from blood of newborn boy.

Gram-negative
oval-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	"Acinetobacter septicus"
	Full Scientific Name (LPSN)	Acinetobacter septicus Kilic et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #123759]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %98.5

[Ref.: #123759]	Cell shape	oval-shaped

[Ref.: #123759]	Motility	no

[Ref.: #19068]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #36258]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36258]

Culture medium growth

[Ref.: #36258]

Culture medium composition

expand / minimize

[Ref.: #123759]

Culture medium

CIP Medium 72

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #19068]	growth	37 °C
[Ref.: #36258]	growth	30 °C
[Ref.: #60824]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60824]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.6

[Ref.: #125439]	Ability of spore formation	no Confidence in %92.6
[Ref.: #125438]	Ability of spore formation	no Confidence in %95.291

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #19068]	26493	-	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	+	+/-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19068]	Sample type/isolated from	blood of newborn boy
[Ref.: #19068]	Geographic location (country and/or sea, region)	Ankara
[Ref.: #19068]	Country	Turkey
[Ref.: #19068]	Country ISO 3 Code	TUR
[Ref.: #19068]	Continent	Asia

[Ref.: #60824]	Sample type/isolated from	Human blood,neonate (outbreak strain)
[Ref.: #60824]	Sampling date	2006-03-22
[Ref.: #60824]	Geographic location (country and/or sea, region)	Ankara
[Ref.: #60824]	Country	Turkey
[Ref.: #60824]	Country ISO 3 Code	TUR
[Ref.: #60824]	Continent	Asia

[Ref.: #123759]	Sample type/isolated from	Human, Blood
[Ref.: #123759]	Geographic location (country and/or sea, region)	Gulhane
[Ref.: #123759]	Country	Turkey
[Ref.: #123759]	Country ISO 3 Code	TUR
[Ref.: #123759]	Continent	Asia
[Ref.: #123759]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Fluids	#Blood
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF611420 (>99% sequence identity) for Acinetobacter septicus from Microbeatlas

Aquatic Samples	7
Soil Samples
Animal Samples	59
Plant Samples	10
Total Samples	76

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #123759]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19068]	Acinetobacter septicus strain AK001 clone 0106 16S ribosomal RNA gene, partial sequence	EF611418	1531	GenBank ENA	465797 tax ID
[Ref.: #19068]	Acinetobacter septicus strain AK001 clone 0110 16S ribosomal RNA gene, partial sequence	EF611419	1529	GenBank ENA	465797 tax ID
[Ref.: #19068]	Acinetobacter septicus strain AK001 clone 0112 16S ribosomal RNA gene, partial sequence	EF611420	1529	GenBank ENA	465797 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter septicus strain FDAARGOS_1401	465797.3	complete	PATRIC	465797 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter septicus strain FDAARGOS_1401 strain Not applicable PATRIC: 465797.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.515	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	95.291	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.427	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.637	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	77.811	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acinetobacter septicus strain FDAARGOS_1401 PATRIC: 465797.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	92.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	57.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	79.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.6

Availability in culture collections External links

[Ref.: #19068]

Culture collection no.

DSM 19415, CIP 110587, CCUG 56015, CIP 110473, ANC 3649

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acinetobacter septicus sp. nov. association with a nosocomial outbreak of bacteremia in a neonatal intensive care unit.	Kilic A, Li H, Mellmann A, Basustaoglu AC, Kul M, Senses Z, Aydogan H, Stratton CW, Harmsen D, Tang YW	J Clin Microbiol	10.1128/JCM.01876-07	2007	*

References

#19068

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19415

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36258 ; Curators of the CIP;
#60824 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56015

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#123759 Collection of Institut Pasteur ; Curators of the CIP; CIP 110473

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Acinetobacter septicus strain FDAARGOS_1401 strain Not applicable

Acinetobacter septicus strain FDAARGOS_1401

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