Name: Acinetobacter septicus AK001
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23129

Type strain:

Species: Acinetobacter septicus

Strain Designation: AK001

Culture col. no.: DSM 19415, CIP 110587, CCUG 56015, CIP 110473, ANC 3649

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain ANC 3649 <- CCUG <- Acinetobacter septicus: strain AK001

NCBI tax ID(s): 465797 (species)

Section

Acinetobacter septicus AK001 is an aerobe, mesophilic bacterium that was isolated from blood of newborn boy.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	"Acinetobacter septicus"
	Full Scientific Name (LPSN)	Acinetobacter septicus Kilic et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #123759]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.971

[Ref.: #123759]	Cell shape	oval-shaped

[Ref.: #123759]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.82

[Ref.: #19068]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #19068]

Culture medium composition

expand / minimize

[Ref.: #36258]

Culture medium

MEDIUM 72- for trypto casein soja agar

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Culture medium growth

[Ref.: #36258]

Culture medium composition

expand / minimize

[Ref.: #123759]

Culture medium

CIP Medium 72

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #19068]	growth	37 °C
[Ref.: #36258]	growth	30 °C
[Ref.: #60824]	growth	30 °C

[Ref.: #19068]	Temperature range	mesophilic
[Ref.: #36258]	Temperature range	mesophilic
[Ref.: #60824]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60824]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #19068]	23813	-	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	+	+/-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19068]	Sample type/isolated from	blood of newborn boy
[Ref.: #19068]	Geographic location (country and/or sea, region)	Ankara
[Ref.: #19068]	Country	Turkey
[Ref.: #19068]	Country ISO 3 Code	TUR
[Ref.: #19068]	Continent	Asia

[Ref.: #60824]	Sample type/isolated from	Human blood,neonate (outbreak strain)
[Ref.: #60824]	Sampling date	2006-03-22
[Ref.: #60824]	Geographic location (country and/or sea, region)	Ankara
[Ref.: #60824]	Country	Turkey
[Ref.: #60824]	Country ISO 3 Code	TUR
[Ref.: #60824]	Continent	Asia

[Ref.: #123759]	Sample type/isolated from	Human, Blood
[Ref.: #123759]	Geographic location (country and/or sea, region)	Gulhane
[Ref.: #123759]	Country	Turkey
[Ref.: #123759]	Country ISO 3 Code	TUR
[Ref.: #123759]	Continent	Asia
[Ref.: #123759]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Fluids	#Blood
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF611420 (>99% sequence identity) for Acinetobacter septicus from Microbeatlas

Aquatic Samples	7
Soil Samples
Animal Samples	59
Plant Samples	10
Total Samples	76

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #123759]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19068]	Acinetobacter septicus strain AK001 clone 0106 16S ribosomal RNA gene, partial sequence	EF611418	1531	ENA	465797 tax ID
[Ref.: #19068]	Acinetobacter septicus strain AK001 clone 0110 16S ribosomal RNA gene, partial sequence	EF611419	1529	ENA	465797 tax ID
[Ref.: #19068]	Acinetobacter septicus strain AK001 clone 0112 16S ribosomal RNA gene, partial sequence	EF611420	1529	ENA	465797 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter septicus strain FDAARGOS_1401	465797.3	complete	PATRIC	465797 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acinetobacter septicus strain FDAARGOS_1401 strain Not applicable PATRIC: 465797.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acinetobacter septicus strain FDAARGOS_1401 strain Not applicable PATRIC: 465797.3
[Ref.: #69480]	gram-positive	no	97.001	no
[Ref.: #69480]	anaerobic	no	98.056	yes
[Ref.: #69480]	halophile	no	87.464	no
[Ref.: #69480]	spore-forming	no	96.768	no
[Ref.: #69480]	glucose-util	no	82.401	yes
[Ref.: #69480]	aerobic	yes	91.949	yes
[Ref.: #69480]	flagellated	no	95.72	no
[Ref.: #69480]	thermophile	no	99.909	yes
[Ref.: #69480]	motile	no	92.848	no
[Ref.: #69480]	glucose-ferment	no	91.779	yes

Availability in culture collections External links

[Ref.: #19068]

Culture collection no.

DSM 19415, CIP 110587, CCUG 56015, CIP 110473, ANC 3649

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acinetobacter septicus sp. nov. association with a nosocomial outbreak of bacteremia in a neonatal intensive care unit.	Kilic A, Li H, Mellmann A, Basustaoglu AC, Kul M, Senses Z, Aydogan H, Stratton CW, Harmsen D, Tang YW	J Clin Microbiol	10.1128/JCM.01876-07	2007	*

References

#19068

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19415

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36258 ; Curators of the CIP;
#60824 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56015

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#123759 Collection of Institut Pasteur ; Curators of the CIP; CIP 110473
* These data were automatically processed and therefore are not curated

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Acinetobacter septicus strain FDAARGOS_1401 strain Not applicable

Acinetobacter septicus strain FDAARGOS_1401 strain Not applicable

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